Wall clock time and date at job start Thu Apr 9 2020 12:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47124 * 2 1 4 4 C 1.46907 * 110.99633 * 287.99543 * 3 2 1 5 5 C 1.50699 * 109.46797 * 160.36177 * 4 3 2 6 6 H 1.08010 * 120.00031 * 4.65711 * 5 4 3 7 7 C 1.37878 * 120.00243 * 184.66418 * 5 4 3 8 8 N 1.31510 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00089 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47355 * 89.99599 * 9 7 5 11 11 H 1.48502 * 109.47016 * 209.99676 * 9 7 5 12 12 H 1.48502 * 109.47096 * 329.99570 * 9 7 5 13 13 C 1.46901 * 111.00020 * 164.04805 * 3 2 1 14 14 C 1.52997 * 109.47170 * 293.95344 * 13 3 2 15 15 N 1.46893 * 109.47408 * 180.02562 * 14 13 3 16 16 C 1.46843 * 111.00023 * 45.78785 * 15 14 13 17 17 C 1.53039 * 109.52285 * 185.83897 * 16 15 14 18 18 C 1.53116 * 109.28062 * 300.81759 * 17 16 15 19 19 C 1.53123 * 109.15737 * 57.65887 * 18 17 16 20 20 C 1.46852 * 111.00319 * 169.99606 * 15 14 13 21 21 H 1.09008 * 109.47183 * 299.46507 * 1 2 3 22 22 H 1.08999 * 109.47271 * 59.46430 * 1 2 3 23 23 H 1.08996 * 109.47247 * 179.46710 * 1 2 3 24 24 H 1.09005 * 109.47344 * 239.99554 * 2 1 3 25 25 H 1.08999 * 109.47445 * 119.99854 * 2 1 3 26 26 H 1.08994 * 109.47311 * 280.35883 * 4 3 2 27 27 H 1.08998 * 109.46726 * 40.36557 * 4 3 2 28 28 H 0.96997 * 120.00130 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.46956 * 173.94980 * 13 3 2 30 30 H 1.09011 * 109.47243 * 53.94950 * 13 3 2 31 31 H 1.09008 * 109.47512 * 59.99684 * 14 13 3 32 32 H 1.09004 * 109.46947 * 300.00249 * 14 13 3 33 33 H 1.08998 * 109.46312 * 65.82446 * 16 15 14 34 34 H 1.09004 * 109.46446 * 305.85811 * 16 15 14 35 35 H 1.09008 * 109.50242 * 180.87756 * 17 16 15 36 36 H 1.08993 * 109.50307 * 60.76618 * 17 16 15 37 37 H 1.09002 * 109.51938 * 177.55867 * 18 17 16 38 38 H 1.08991 * 109.52704 * 297.75054 * 18 17 16 39 39 H 1.09002 * 109.50470 * 62.28035 * 19 18 17 40 40 H 1.09003 * 109.50325 * 182.40583 * 19 18 17 41 41 H 1.09006 * 109.45996 * 54.14524 * 20 15 14 42 42 H 1.08993 * 109.46274 * 294.18158 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7956 2.0225 -1.3044 5 6 1.8469 3.5204 -1.1468 6 1 2.1021 3.9544 -0.1913 7 6 1.5680 4.3367 -2.2224 8 7 1.2577 3.8082 -3.3859 9 14 1.6324 6.1934 -2.0272 10 1 3.0029 6.6761 -2.3334 11 1 0.6654 6.8231 -2.9619 12 1 1.2799 6.5568 -0.6312 13 6 3.4383 1.4418 0.3769 14 6 3.5973 0.9996 1.8329 15 7 5.0158 1.0569 2.2101 16 6 5.6290 2.3138 1.7622 17 6 7.1333 2.2769 2.0414 18 6 7.3642 2.0812 3.5424 19 6 6.6747 0.7903 3.9927 20 6 5.1837 0.8703 3.6570 21 1 -0.3634 0.5055 0.8948 22 1 -0.3634 0.5221 -0.8851 23 1 -0.3633 -1.0276 -0.0096 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5698 1.7039 -2.0023 27 1 0.8180 1.7308 -1.6882 28 1 1.0619 4.3825 -4.1427 29 1 3.8033 2.4628 0.2653 30 1 4.0128 0.7779 -0.2692 31 1 3.2323 -0.0215 1.9445 32 1 3.0228 1.6634 2.4790 33 1 5.1801 3.1488 2.3001 34 1 5.4611 2.4388 0.6924 35 1 7.5856 3.2162 1.7231 36 1 7.5851 1.4506 1.4929 37 1 8.4338 2.0110 3.7402 38 1 6.9465 2.9269 4.0886 39 1 7.1193 -0.0595 3.4748 40 1 6.7993 0.6674 5.0686 41 1 4.6924 -0.0532 3.9634 42 1 4.7369 1.7120 4.1860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081065373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:00 Heat of formation + Delta-G solvation = -5.629274 kcal Electronic energy + Delta-G solvation = -18025.055382 eV Core-core repulsion = 15425.423114 eV Total energy + Delta-G solvation = -2599.632267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.02071 -36.89511 -33.62899 -32.55694 -30.89881 -30.10189 -28.29553 -25.86929 -24.02637 -22.99059 -22.44350 -21.18097 -19.64174 -19.31447 -16.51188 -16.01028 -15.03146 -14.87154 -14.55051 -14.40935 -14.13778 -13.73547 -13.55887 -13.28816 -13.07627 -12.32964 -12.23140 -12.06644 -11.72052 -11.39210 -11.23564 -11.14139 -10.92419 -10.82537 -10.77335 -10.64558 -10.41043 -10.27593 -10.17786 -9.94252 -9.52940 -9.17465 -8.39513 -8.07742 -7.20130 -5.99766 -4.00583 3.32371 3.38705 3.43104 4.04292 4.44942 4.82263 4.89924 4.93692 5.07844 5.28671 5.36139 5.43523 5.54088 5.59198 5.66042 5.66917 5.74751 5.82072 5.91037 5.96335 5.98292 6.04096 6.06834 6.13902 6.18310 6.30462 6.36554 6.38900 6.52914 6.61906 6.67216 6.85604 7.22924 7.33167 7.36137 7.39581 7.85113 8.16927 8.27059 8.59043 9.06777 9.63167 11.10889 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.006475 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.776691 B = 4323.487151 C = 5409.853329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.537 5.537 4 C 0.191 3.809 5 C -0.502 4.502 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.062 3.938 14 C 0.059 3.941 15 N -0.538 5.538 16 C 0.046 3.954 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.115 4.115 20 C 0.056 3.944 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.021 0.979 25 H 0.059 0.941 26 H -0.012 1.012 27 H 0.037 0.963 28 H 0.261 0.739 29 H 0.083 0.917 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.405 -6.028 12.148 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.262 5.262 4 C 0.067 3.933 5 C -0.541 4.541 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 C -0.069 4.069 15 N -0.264 5.264 16 C -0.082 4.082 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.072 4.072 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.006 0.994 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.311 -6.097 12.071 15.873 hybrid contribution -0.008 1.241 -0.245 1.265 sum 8.303 -4.856 11.826 15.244 Atomic orbital electron populations 1.21744 0.95648 0.99840 1.02835 1.22044 0.95868 0.91055 0.99045 1.62135 1.15518 1.14194 1.34364 1.19773 0.96437 0.94158 0.82981 1.21159 1.45995 0.90734 0.96212 0.92126 1.24976 0.95555 0.98841 0.95245 1.69952 1.47806 1.35175 1.01015 0.86542 0.77720 0.85471 0.77957 1.20777 1.21264 1.19854 1.22067 0.89965 1.01455 0.93154 1.22174 0.86610 1.00816 0.97276 1.61980 1.15549 1.35159 1.13693 1.22234 0.94068 0.90073 1.01780 1.21598 0.96086 1.01836 0.95949 1.21580 0.99973 0.97725 0.96598 1.21572 0.95218 0.98409 1.00102 1.22047 0.96423 1.00466 0.88272 0.92525 0.92052 0.93734 0.96075 0.92285 0.99424 0.94510 0.92980 0.89879 0.95568 0.91220 0.94282 0.94898 0.89437 0.91735 0.91279 0.92194 0.92448 0.91259 0.91993 0.91144 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.99 37.15 0.37 -2.12 16 2 C 0.05 0.90 5.55 -3.83 -0.02 0.88 16 3 N -0.54 -11.72 4.38 -236.07 -1.03 -12.76 16 4 C 0.19 5.03 4.59 -4.97 -0.02 5.01 16 5 C -0.50 -14.21 8.61 -34.44 -0.30 -14.51 16 6 H 0.06 1.71 7.66 -52.48 -0.40 1.31 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 1.22 4.03 -3.82 -0.02 1.20 16 14 C 0.06 0.96 5.24 -3.83 -0.02 0.94 16 15 N -0.54 -7.92 4.81 -234.67 -1.13 -9.04 16 16 C 0.05 0.67 4.85 -3.84 -0.02 0.65 16 17 C -0.12 -1.40 6.09 -26.65 -0.16 -1.56 16 18 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 19 C -0.12 -1.20 6.09 -26.65 -0.16 -1.37 16 20 C 0.06 0.69 5.42 -3.83 -0.02 0.67 16 21 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 22 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 25 H 0.06 0.97 5.94 -51.93 -0.31 0.66 16 26 H -0.01 -0.34 8.00 -51.93 -0.42 -0.75 16 27 H 0.04 1.03 6.24 -51.93 -0.32 0.70 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.08 1.77 5.38 -51.93 -0.28 1.49 16 30 H 0.03 0.53 8.12 -51.92 -0.42 0.10 16 31 H 0.07 1.09 6.28 -51.92 -0.33 0.77 16 32 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.41 5.81 -51.93 -0.30 1.11 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -29.39 319.20 -10.00 -39.39 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.74 Total: -2.88 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.63 Total: -10.15 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -1.43 Total: -47.95 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.39 -10.00 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081065373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.764 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds