Wall clock time and date at job start Thu Apr 9 2020 12:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48504 * 109.46702 * 269.99768 * 3 2 1 5 5 H 1.48501 * 109.47246 * 29.99623 * 3 2 1 6 6 H 1.48497 * 109.47727 * 150.00164 * 3 2 1 7 7 C 1.37885 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 173.81458 * 7 2 1 9 9 C 1.50696 * 119.99744 * 353.81482 * 7 2 1 10 10 C 1.53005 * 115.54792 * 84.90952 * 9 7 2 11 11 S 1.80996 * 109.47246 * 39.92405 * 10 9 7 12 12 C 1.76204 * 99.99702 * 180.02562 * 11 10 9 13 13 N 1.29760 * 124.94936 * 179.97438 * 12 11 10 14 14 C 1.32097 * 116.85671 * 179.97438 * 13 12 11 15 15 C 1.33332 * 114.58308 * 359.97438 * 14 13 12 16 16 S 1.70965 * 124.95584 * 359.69333 * 12 11 10 17 17 C 1.52999 * 117.52045 * 230.60843 * 9 7 2 18 18 C 1.52994 * 60.00133 * 107.48260 * 17 9 7 19 19 H 0.97000 * 119.99830 * 355.01602 * 1 2 3 20 20 H 1.09008 * 109.46662 * 159.92382 * 10 9 7 21 21 H 1.08998 * 109.46825 * 279.91980 * 10 9 7 22 22 H 1.07997 * 122.70934 * 180.02562 * 14 13 12 23 23 H 1.07998 * 125.94788 * 179.97438 * 15 14 13 24 24 H 1.08997 * 117.49892 * 214.97715 * 17 9 7 25 25 H 1.08999 * 117.49352 * 359.97438 * 17 9 7 26 26 H 1.09002 * 117.50347 * 252.51258 * 18 17 9 27 27 H 1.09001 * 117.51797 * 107.48183 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0798 -1.1968 -0.1002 9 6 1.2577 -2.4953 0.1417 10 6 0.6965 -3.0783 -1.1568 11 16 1.8976 -2.8465 -2.4908 12 6 1.0181 -3.5865 -3.8264 13 7 1.4572 -3.6812 -5.0437 14 6 0.6630 -4.2690 -5.9205 15 6 -0.4992 -4.6903 -5.4210 16 16 -0.5352 -4.2905 -3.7057 17 6 1.7486 -3.4806 1.2043 18 6 0.4456 -2.7086 1.4208 19 1 -0.4850 0.8369 0.0730 20 1 0.5027 -4.1427 -1.0233 21 1 -0.2328 -2.5690 -1.4120 22 1 0.9336 -4.3986 -6.9580 23 1 -1.2814 -5.1917 -5.9716 24 1 1.6720 -4.5441 0.9782 25 1 2.6124 -3.1879 1.8011 26 1 0.4519 -1.9078 2.1603 27 1 -0.4886 -3.2639 1.3371 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862464.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:08 Heat of formation + Delta-G solvation = 64.230865 kcal Electronic energy + Delta-G solvation = -12651.836378 eV Core-core repulsion = 10435.521270 eV Total energy + Delta-G solvation = -2216.315108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 241.029 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.98013 -36.74276 -32.07519 -30.08020 -28.04775 -25.65877 -24.97313 -21.24504 -20.62645 -19.06088 -18.45105 -16.42702 -15.73141 -14.79017 -14.69290 -14.31227 -13.90347 -13.56856 -13.21250 -12.98700 -12.26018 -11.66246 -11.25265 -11.04799 -10.96420 -10.56785 -10.33631 -10.13784 -9.79323 -9.56723 -9.14586 -8.99478 -8.87306 -8.56062 -8.19221 -6.86544 -6.17334 -4.24328 0.96264 1.53336 1.80141 2.12053 3.10872 3.24084 3.28193 3.34519 3.37514 4.34065 4.95569 5.11510 5.16302 5.37557 5.74544 5.76542 5.95537 6.23276 6.31975 6.33080 6.57428 6.65420 6.92655 7.16802 7.35448 7.75874 7.95843 8.20916 8.77800 9.43322 10.91111 Molecular weight = 241.03amu Principal moments of inertia in cm(-1) A = 0.029276 B = 0.007948 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.171440 B = 3522.020025 C = 3951.568693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.496 4.496 8 H 0.067 0.933 9 C 0.051 3.949 10 C -0.080 4.080 11 S 0.068 5.932 12 C 0.024 3.976 13 N -0.482 5.482 14 C 0.055 3.945 15 C -0.289 4.289 16 S 0.108 5.892 17 C -0.205 4.205 18 C -0.146 4.146 19 H 0.263 0.737 20 H 0.062 0.938 21 H 0.093 0.907 22 H 0.171 0.829 23 H 0.171 0.829 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -7.619 -5.188 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.536 4.536 8 H 0.085 0.915 9 C 0.049 3.951 10 C -0.230 4.230 11 S 0.306 5.694 12 C -0.360 4.360 13 N -0.202 5.202 14 C -0.099 4.099 15 C -0.433 4.433 16 S 0.357 5.643 17 C -0.242 4.242 18 C -0.185 4.185 19 H 0.073 0.927 20 H 0.081 0.919 21 H 0.111 0.889 22 H 0.188 0.812 23 H 0.188 0.812 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.223 -6.878 -4.508 8.314 hybrid contribution -0.878 0.182 -1.070 1.396 sum -2.101 -6.696 -5.578 8.965 Atomic orbital electron populations 1.69990 1.06013 1.27279 1.47388 1.24939 0.94760 0.99067 0.93716 0.86641 0.80076 0.83169 0.78556 1.20177 1.21119 1.19637 1.20369 0.93087 0.88379 1.51737 0.91536 1.18401 0.98636 0.94262 0.83824 1.23603 1.00222 1.01309 0.97835 1.86359 1.22081 1.66294 0.94690 1.29784 0.99595 1.04317 1.02346 1.66711 1.33919 1.20198 0.99396 1.21806 0.90114 0.97643 1.00297 1.26742 1.04466 1.14322 0.97770 1.84134 1.17904 1.54085 1.08192 1.23110 0.98732 0.95599 1.06786 1.22578 0.92369 1.01223 1.02367 0.92720 0.91923 0.88856 0.81181 0.81204 0.91376 0.89893 0.89553 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.29 12.93 55.43 0.72 -22.58 15 2 C 0.08 2.09 5.39 -17.82 -0.10 1.99 15 3 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.50 -12.63 7.54 -34.44 -0.26 -12.89 15 8 H 0.07 1.72 7.82 -52.49 -0.41 1.31 15 9 C 0.05 1.16 1.64 -155.66 -0.26 0.91 15 10 C -0.08 -1.68 4.74 37.16 0.18 -1.50 15 11 S 0.07 1.43 21.16 -107.50 -2.27 -0.85 15 12 C 0.02 0.46 7.59 51.89 0.39 0.85 15 13 N -0.48 -9.17 10.61 -14.78 -0.16 -9.32 15 14 C 0.06 0.84 11.34 -19.15 -0.22 0.63 15 15 C -0.29 -4.02 11.34 29.02 0.33 -3.69 15 16 S 0.11 1.76 21.54 -107.50 -2.32 -0.56 15 17 C -0.21 -4.14 9.88 -26.73 -0.26 -4.41 15 18 C -0.15 -3.15 9.47 -26.73 -0.25 -3.40 15 19 H 0.26 6.78 8.32 -40.82 -0.34 6.44 15 20 H 0.06 1.18 7.77 -51.91 -0.40 0.77 15 21 H 0.09 2.10 7.98 -51.92 -0.41 1.69 15 22 H 0.17 1.98 8.06 -52.49 -0.42 1.56 15 23 H 0.17 1.77 8.06 -52.49 -0.42 1.34 15 24 H 0.07 1.23 8.08 -51.93 -0.42 0.81 15 25 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 26 H 0.09 1.99 8.14 -51.93 -0.42 1.56 15 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 266.55 15.07 4.02 4.02 Total: -1.00 -27.32 266.55 -8.38 -35.70 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.90 Total: -0.32 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -0.45 Total: -21.52 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.56 Total: -31.90 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -4.59 Total: -1.41 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.32 -8.38 -35.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862464.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.931 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds