Wall clock time and date at job start Thu Apr 9 2020 12:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 C 1.32738 * 124.70363 * 90.00092 * 12 11 10 14 14 C 1.44466 * 113.09209 * 179.97438 * 13 12 11 15 15 C 1.47027 * 123.48079 * 179.97438 * 14 13 12 16 16 O 1.21560 * 119.99631 * 359.97438 * 15 14 13 17 17 O 1.34793 * 120.00421 * 179.97438 * 15 14 13 18 18 C 1.36113 * 113.04745 * 359.97438 * 14 13 12 19 19 S 1.70449 * 110.80417 * 359.76634 * 18 14 13 20 20 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 22 22 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 23 23 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 24 24 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 25 25 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 26 26 H 1.08004 * 123.45409 * 359.97438 * 13 12 11 27 27 H 0.96701 * 117.00312 * 179.97438 * 17 15 14 28 28 H 1.07996 * 124.59563 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5148 -6.0260 0.0006 13 6 3.0202 -6.5872 1.0922 14 6 3.9679 -7.6382 0.8020 15 6 4.6650 -8.4112 1.8404 16 8 4.4556 -8.1781 3.0149 17 8 5.5363 -9.3782 1.4901 18 6 4.1489 -7.8391 -0.5320 19 16 3.1789 -6.7732 -1.4419 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5572 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 2.8405 -3.5487 0.7819 24 1 0.8801 -4.9818 0.8897 25 1 0.8807 -4.9813 -0.8902 26 1 2.7506 -6.2886 2.0945 27 1 5.9705 -9.8590 2.2080 28 1 4.8137 -8.5770 -0.9563 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087414744.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:12 Heat of formation + Delta-G solvation = -66.149454 kcal Electronic energy + Delta-G solvation = -14057.748492 eV Core-core repulsion = 11393.026798 eV Total energy + Delta-G solvation = -2664.721694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.24457 -37.55099 -36.11799 -35.22244 -32.63357 -30.42368 -27.00219 -25.53813 -24.40417 -21.65819 -21.16085 -19.40394 -18.13266 -17.40715 -16.54417 -16.19997 -15.72062 -14.77666 -14.58069 -14.16157 -13.74040 -13.37990 -12.85514 -12.58293 -12.54432 -11.99576 -11.67316 -11.55347 -11.25468 -11.04985 -10.76095 -10.70817 -10.49347 -10.01719 -9.28308 -8.86093 -8.50822 -8.49928 -7.42329 -6.06355 -4.08663 0.62864 1.49502 1.81260 1.95168 2.96530 3.05034 3.32858 3.36528 3.39852 4.41109 4.71994 5.09309 5.16403 5.29635 5.37799 5.43454 5.63666 5.93010 6.02475 6.12723 6.30678 6.37198 7.13757 7.33900 7.72115 7.78529 8.05860 8.28384 8.50979 8.99658 9.56344 11.04659 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.004466 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.257118 B = 6268.160663 C = 6548.783064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.123 3.877 12 C -0.174 4.174 13 C -0.096 4.096 14 C -0.153 4.153 15 C 0.547 3.453 16 O -0.515 6.515 17 O -0.516 6.516 18 C -0.198 4.198 19 S 0.230 5.770 20 H 0.263 0.737 21 H 0.030 0.970 22 H -0.011 1.011 23 H 0.333 0.667 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.412 0.588 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 -17.665 -1.104 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.316 5.316 11 C -0.008 4.008 12 C -0.291 4.291 13 C -0.124 4.124 14 C -0.170 4.170 15 C 0.390 3.610 16 O -0.405 6.405 17 O -0.328 6.328 18 C -0.337 4.337 19 S 0.497 5.503 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.007 0.993 23 H 0.150 0.850 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.170 0.830 27 H 0.270 0.730 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.818 -16.994 -3.360 18.617 hybrid contribution 0.708 0.254 2.971 3.065 sum 7.527 -16.741 -0.389 18.359 Atomic orbital electron populations 1.69944 1.06084 1.27009 1.50651 1.24985 0.94898 0.99403 0.95234 0.86516 0.79408 0.82527 0.78696 1.20122 1.21316 1.20229 1.21117 0.93532 0.90099 1.50721 0.91932 1.19591 0.90533 0.87096 0.96016 1.60775 1.21144 1.00308 1.49405 1.20422 0.91862 0.87128 1.01433 1.24561 1.05465 1.03646 0.95472 1.20928 0.96391 0.95041 1.00062 1.19218 1.04406 1.02191 0.91170 1.20219 0.76183 0.77140 0.87474 1.90910 1.62921 1.66611 1.20040 1.84571 1.55295 1.48166 1.44755 1.25916 1.05099 1.04981 0.97689 1.83229 1.33644 1.25116 1.08288 0.92788 0.95209 0.99293 0.85003 0.93794 0.90278 0.82984 0.72965 0.80751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.52 -14.50 9.32 -34.44 -0.32 -14.83 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.19 4.98 5.44 -4.97 -0.03 4.95 15 10 N -0.69 -14.35 6.48 -116.34 -0.75 -15.11 15 11 C 0.12 2.09 6.14 -4.98 -0.03 2.06 15 12 C -0.17 -2.55 5.95 -36.19 -0.22 -2.76 15 13 C -0.10 -1.39 9.95 -39.01 -0.39 -1.78 15 14 C -0.15 -2.02 5.98 -104.65 -0.63 -2.65 15 15 C 0.55 7.07 8.30 34.29 0.28 7.35 15 16 O -0.52 -8.15 17.58 -19.31 -0.34 -8.49 15 17 O -0.52 -4.73 13.08 -40.74 -0.53 -5.26 15 18 C -0.20 -2.22 10.56 29.97 0.32 -1.90 15 19 S 0.23 2.74 23.00 -107.50 -2.47 0.27 15 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 22 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 15 23 H 0.33 6.82 8.72 -39.29 -0.34 6.48 15 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.15 2.21 8.06 -52.48 -0.42 1.79 15 27 H 0.41 1.86 9.11 45.56 0.42 2.27 15 28 H 0.18 1.50 8.02 -52.49 -0.42 1.08 15 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -32.21 273.97 -7.37 -39.58 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.01 Total: 2.18 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.10 Total: -8.05 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.02 Total: -40.96 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.87 Total: -13.75 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.47 Total: 0.27 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.21 -7.37 -39.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087414744.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.571 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds