Wall clock time and date at job start Thu Apr 9 2020 12:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35788 * 116.99688 * 2 1 4 4 C 1.38014 * 123.47394 * 359.97438 * 3 2 1 5 5 C 1.33617 * 115.08900 * 180.02562 * 4 3 2 6 6 S 1.70578 * 111.14234 * 359.97438 * 5 4 3 7 7 C 1.37271 * 123.46693 * 179.97438 * 3 2 1 8 8 C 1.41717 * 125.47925 * 359.96896 * 7 3 2 9 9 O 1.21776 * 120.00124 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99910 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99816 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47203 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99712 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00247 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00144 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46883 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47018 * 119.99619 * 16 14 12 19 19 H 1.48495 * 109.46758 * 239.99531 * 16 14 12 20 20 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47470 * 300.00656 * 1 2 3 22 22 H 1.09007 * 109.47002 * 60.00965 * 1 2 3 23 23 H 1.08000 * 122.45707 * 0.02562 * 4 3 2 24 24 H 1.07997 * 124.42778 * 180.26429 * 5 4 3 25 25 H 0.96996 * 120.00207 * 0.02562 * 10 8 7 26 26 H 1.08999 * 109.47340 * 300.00216 * 11 10 8 27 27 H 1.09007 * 109.47268 * 60.00500 * 11 10 8 28 28 H 0.96990 * 119.99834 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0005 5 6 2.1388 3.5002 -0.0010 6 16 3.7922 3.0806 -0.0001 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0017 9 8 3.9793 -0.8472 0.0019 10 7 5.6752 0.5897 0.0026 11 6 6.6546 -0.5000 0.0045 12 6 8.0471 0.0762 0.0058 13 1 8.1884 1.1469 0.0050 14 6 9.1406 -0.7636 0.0071 15 7 8.9684 -2.0675 0.0077 16 14 10.8667 -0.0494 0.0081 17 1 10.7888 1.4336 0.0066 18 1 11.5907 -0.5063 1.2214 19 1 11.5926 -0.5077 -1.2035 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 0.2865 2.4659 -0.0005 24 1 1.7661 4.5138 0.0027 25 1 5.9758 1.5119 0.0029 26 1 6.5145 -1.1129 0.8948 27 1 6.5161 -1.1145 -0.8852 28 1 9.7377 -2.6582 0.0089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088028547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:14 Heat of formation + Delta-G solvation = -40.975893 kcal Electronic energy + Delta-G solvation = -14603.507619 eV Core-core repulsion = 11939.877533 eV Total energy + Delta-G solvation = -2663.630086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98713 -38.29839 -35.86809 -34.05526 -32.27794 -30.17609 -27.65944 -26.50295 -24.63204 -22.66267 -20.52087 -19.53277 -18.49178 -16.84231 -16.25435 -15.80721 -15.44441 -14.92471 -14.65593 -14.25120 -14.02957 -13.69880 -12.81109 -12.77324 -12.48221 -11.93512 -11.66278 -11.54475 -11.09070 -10.93590 -10.87535 -10.86990 -10.26109 -9.31583 -9.07429 -8.75636 -8.67474 -8.03174 -7.73429 -6.11150 -4.17601 0.63653 1.53090 1.85956 2.45275 3.27269 3.34009 3.37493 3.56854 4.01959 4.21803 4.44377 4.68353 5.04482 5.10405 5.11047 5.24880 5.43938 5.48189 5.72814 5.86766 6.19642 7.32486 7.42471 7.51916 7.60380 7.73953 8.03042 8.69320 8.85127 9.18066 9.48741 10.99243 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.005716 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.151019 B = 4897.246690 C = 5589.951419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.270 6.270 3 C 0.170 3.830 4 C -0.210 4.210 5 C -0.213 4.213 6 S 0.228 5.772 7 C -0.302 4.302 8 C 0.573 3.427 9 O -0.535 6.535 10 N -0.713 5.713 11 C 0.251 3.749 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.101 0.899 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.146 0.854 24 H 0.170 0.830 25 H 0.385 0.615 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 12.252 -0.012 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.181 6.181 3 C 0.110 3.890 4 C -0.244 4.244 5 C -0.352 4.352 6 S 0.493 5.507 7 C -0.422 4.422 8 C 0.359 3.641 9 O -0.416 6.416 10 N -0.362 5.362 11 C 0.130 3.870 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.119 0.881 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.164 0.836 24 H 0.188 0.812 25 H 0.218 0.782 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.916 11.841 -0.012 18.272 hybrid contribution -0.631 0.183 0.000 0.657 sum -14.547 12.024 -0.012 18.873 Atomic orbital electron populations 1.23134 0.78991 1.04163 1.00891 1.86382 1.20282 1.24072 1.87365 1.18270 0.90355 0.85343 0.95046 1.19998 1.01759 0.91063 1.11567 1.24983 0.99556 1.03450 1.07176 1.83116 1.02978 0.96292 1.68271 1.23171 0.95730 0.98257 1.25060 1.15654 0.82344 0.87495 0.78570 1.90832 1.79737 1.20037 1.50947 1.46390 1.05465 1.11213 1.73110 1.19113 0.84986 0.84999 0.97878 1.21270 0.90355 0.93390 1.52954 0.91867 1.24953 0.99580 0.94741 0.94768 1.69992 1.30917 1.02284 1.49092 0.86364 0.83678 0.79184 0.77710 1.19604 1.20817 1.20823 0.88056 0.92878 0.92873 0.83630 0.81215 0.78247 0.95367 0.95362 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.94 101.05 1.00 1.25 15 2 O -0.27 -4.58 9.36 -36.59 -0.34 -4.92 15 3 C 0.17 2.75 6.70 -40.02 -0.27 2.49 15 4 C -0.21 -2.47 9.17 -41.28 -0.38 -2.85 15 5 C -0.21 -2.22 10.90 29.11 0.32 -1.91 15 6 S 0.23 2.94 22.00 -107.50 -2.37 0.57 15 7 C -0.30 -5.48 6.28 -38.61 -0.24 -5.72 15 8 C 0.57 13.20 7.59 -14.93 -0.11 13.08 15 9 O -0.54 -14.43 15.84 -12.40 -0.20 -14.63 15 10 N -0.71 -16.55 5.54 -64.37 -0.36 -16.90 15 11 C 0.25 6.99 5.43 -5.19 -0.03 6.97 15 12 C -0.54 -15.16 9.28 -34.44 -0.32 -15.48 15 13 H 0.06 1.66 7.60 -52.48 -0.40 1.26 15 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 15 N -0.89 -26.62 13.29 55.43 0.74 -25.88 15 16 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 15 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 20 H 0.10 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.05 0.45 7.88 -51.93 -0.41 0.04 15 22 H 0.05 0.45 7.88 -51.93 -0.41 0.04 15 23 H 0.15 1.26 6.99 -52.49 -0.37 0.90 15 24 H 0.17 1.16 8.06 -52.49 -0.42 0.74 15 25 H 0.38 7.78 7.29 -40.82 -0.30 7.48 15 26 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -34.86 266.07 -6.37 -41.23 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -2.71 Total: 0.82 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.13 Total: -0.48 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.38 Total: -42.78 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.54 Total: -19.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.37 Total: 0.57 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.86 -6.37 -41.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088028547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.254 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds