Wall clock time and date at job start Thu Apr 9 2020 12:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99937 * 2 1 4 4 C 1.53000 * 109.47252 * 66.04554 * 3 2 1 5 5 C 1.53001 * 109.47355 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47168 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00563 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99854 * 179.72538 * 8 6 5 11 11 H 1.48504 * 109.47032 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46816 * 120.00323 * 10 8 6 13 13 H 1.48495 * 109.46630 * 240.00111 * 10 8 6 14 14 C 1.46898 * 111.00301 * 236.04330 * 2 1 3 15 15 C 1.52998 * 109.47332 * 293.95490 * 14 2 1 16 16 H 1.09009 * 109.90406 * 63.89260 * 15 14 2 17 17 C 1.53993 * 109.91821 * 184.99517 * 15 14 2 18 18 C 1.54603 * 105.13586 * 120.57943 * 17 15 14 19 19 C 1.54939 * 102.91998 * 21.95683 * 18 17 15 20 20 N 1.47897 * 109.91731 * 302.58988 * 15 14 2 21 21 C 1.46907 * 111.00151 * 94.80132 * 20 15 14 22 22 H 1.09001 * 109.47197 * 60.00161 * 1 2 3 23 23 H 1.08999 * 109.47173 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47372 * 300.00545 * 1 2 3 25 25 H 1.09000 * 109.47311 * 306.04549 * 3 2 1 26 26 H 1.09002 * 109.47056 * 186.04207 * 3 2 1 27 27 H 1.09000 * 109.46966 * 59.99784 * 4 3 2 28 28 H 1.09002 * 109.46807 * 299.99806 * 4 3 2 29 29 H 1.08998 * 109.46837 * 59.99832 * 5 4 3 30 30 H 1.09002 * 109.46926 * 299.99636 * 5 4 3 31 31 H 0.97001 * 119.99646 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.46829 * 53.95570 * 14 2 1 33 33 H 1.09004 * 109.47123 * 173.95378 * 14 2 1 34 34 H 1.08995 * 110.30882 * 239.49166 * 17 15 14 35 35 H 1.08995 * 110.30811 * 1.66877 * 17 15 14 36 36 H 1.08998 * 110.72401 * 140.31908 * 18 17 15 37 37 H 1.09000 * 110.72314 * 263.42437 * 18 17 15 38 38 H 1.08997 * 110.66654 * 81.02344 * 19 18 17 39 39 H 1.09006 * 110.66113 * 204.14641 * 19 18 17 40 40 H 1.08994 * 109.46796 * 59.99866 * 21 20 15 41 41 H 1.09004 * 109.47040 * 180.02562 * 21 20 15 42 42 H 1.09002 * 109.46793 * 300.00195 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1792 3.4861 1.3180 6 6 1.8201 4.1620 2.6161 7 1 1.2571 3.6264 3.3662 8 6 2.2103 5.4643 2.8463 9 7 2.8954 6.1167 1.9328 10 14 1.7586 6.3046 4.4524 11 1 0.9864 5.3638 5.3032 12 1 2.9971 6.7118 5.1633 13 1 0.9337 7.5060 4.1673 14 6 1.9955 -0.7660 -1.1375 15 6 1.6316 -2.2426 -0.9703 16 1 0.5486 -2.3637 -1.0006 17 6 2.2839 -3.0739 -2.0905 18 6 3.1864 -4.0958 -1.3615 19 6 2.5649 -4.1573 0.0565 20 7 2.1635 -2.7504 0.3129 21 6 1.1462 -2.6776 1.3703 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.5611 1.9274 -0.8309 26 1 3.0797 1.3444 -0.1082 27 1 2.0658 1.5016 2.1492 28 1 0.5471 2.0845 1.4264 29 1 1.7444 4.0417 0.4871 30 1 3.2635 3.4595 1.2096 31 1 3.1702 7.0327 2.0949 32 1 1.5612 -0.3873 -2.0627 33 1 3.0798 -0.6611 -1.1755 34 1 1.5204 -3.5906 -2.6718 35 1 2.8837 -2.4331 -2.7367 36 1 3.1361 -5.0703 -1.8473 37 1 4.2158 -3.7401 -1.3192 38 1 1.6947 -4.8136 0.0670 39 1 3.3046 -4.4856 0.7867 40 1 0.2836 -3.2803 1.0865 41 1 1.5639 -3.0567 2.3030 42 1 0.8367 -1.6413 1.5058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092628414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:20 Heat of formation + Delta-G solvation = -1.826026 kcal Electronic energy + Delta-G solvation = -17727.846389 eV Core-core repulsion = 15128.379043 eV Total energy + Delta-G solvation = -2599.467346 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.45437 -36.92098 -33.61741 -32.20667 -31.56814 -29.71498 -27.15742 -26.32238 -25.13911 -23.57227 -21.55568 -21.04831 -19.86427 -19.69549 -16.33807 -16.16481 -15.60431 -15.31582 -14.85159 -14.39700 -14.22704 -13.68949 -13.64058 -13.12527 -12.95541 -12.45651 -12.24773 -11.81940 -11.68269 -11.59505 -11.38476 -11.25154 -11.14188 -10.95062 -10.88329 -10.76230 -10.61266 -10.45786 -10.34701 -9.52734 -9.25489 -8.97872 -8.33195 -8.28685 -7.87917 -5.94187 -3.95697 3.34947 3.42116 3.46870 3.97911 4.21261 4.51719 4.59829 4.67359 4.83997 5.05116 5.28121 5.39614 5.41676 5.43214 5.50767 5.54306 5.57981 5.66877 5.70441 5.72631 5.79273 5.81247 5.95321 5.99606 6.08926 6.12342 6.21348 6.30380 6.43232 6.80427 6.86940 6.97676 7.14624 7.22538 7.49057 7.52204 7.76102 7.92020 8.07265 8.51028 9.11931 9.67964 11.17389 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044216 B = 0.004073 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.096992 B = 6872.066622 C = 7055.072069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.058 3.942 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.071 3.929 15 C 0.070 3.930 16 H 0.049 0.951 17 C -0.128 4.128 18 C -0.122 4.122 19 C 0.030 3.970 20 N -0.497 5.497 21 C 0.015 3.985 22 H 0.019 0.981 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.013 0.987 41 H 0.061 0.939 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -19.956 -7.549 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.254 5.254 3 C -0.069 4.069 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.058 4.058 15 C -0.039 4.039 16 H 0.067 0.933 17 C -0.167 4.167 18 C -0.160 4.160 19 C -0.098 4.098 20 N -0.220 5.220 21 C -0.133 4.133 22 H 0.038 0.962 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.106 -19.690 -6.963 20.991 hybrid contribution -1.245 0.497 -0.144 1.349 sum -3.351 -19.193 -7.107 20.739 Atomic orbital electron populations 1.22512 0.88722 1.00722 1.01092 1.62030 1.06750 1.14754 1.41888 1.22286 0.99561 0.86213 0.98863 1.21627 0.99826 0.98063 0.94588 1.19080 0.96258 0.89459 0.96869 1.21303 1.34454 0.97537 1.02097 0.92661 1.25034 0.95304 0.97539 0.96696 1.69982 1.38588 1.11210 1.33905 0.86554 0.78180 0.79459 0.83928 1.19732 1.21041 1.21108 1.22136 1.00682 0.91719 0.91257 1.22421 0.97023 0.94990 0.89491 0.93345 1.22438 0.99037 0.97712 0.97486 1.22452 0.99897 0.98631 0.95035 1.23285 0.99056 0.90399 0.97085 1.64544 1.37159 1.15297 1.05048 1.22680 0.92301 1.03768 0.94596 0.96229 0.92346 0.90728 0.95692 0.91296 0.92586 0.93657 0.96943 0.96614 0.93160 0.95275 0.90324 0.91729 0.90784 0.91458 0.90659 0.94397 0.90242 0.96837 0.92031 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 7.85 60.06 0.47 0.72 16 2 N -0.53 -8.20 3.46 -242.92 -0.84 -9.04 16 3 C 0.06 1.05 4.96 -3.82 -0.02 1.03 16 4 C -0.10 -2.22 5.08 -26.73 -0.14 -2.35 16 5 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 7 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 8 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.07 0.94 4.42 -3.83 -0.02 0.93 16 15 C 0.07 0.81 2.41 -66.65 -0.16 0.65 16 16 H 0.05 0.57 6.30 -51.92 -0.33 0.24 16 17 C -0.13 -1.20 6.57 -25.37 -0.17 -1.36 16 18 C -0.12 -1.08 7.06 -24.87 -0.18 -1.25 16 19 C 0.03 0.30 6.56 -1.90 -0.01 0.29 16 20 N -0.50 -6.19 5.07 -230.78 -1.17 -7.36 16 21 C 0.01 0.18 8.63 60.07 0.52 0.70 16 22 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 0.71 5.32 -51.93 -0.28 0.44 16 24 H 0.07 1.11 6.47 -51.93 -0.34 0.77 16 25 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.04 0.95 6.55 -51.93 -0.34 0.61 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.67 7.69 -51.93 -0.40 0.27 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.36 7.96 -51.93 -0.41 -0.05 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.32 5.00 -51.93 -0.26 1.06 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -30.62 320.48 -9.49 -40.11 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -7.78 Total: -4.77 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.25 Total: -14.04 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -1.27 Total: -43.20 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.62 -9.49 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092628414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.286 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds