Wall clock time and date at job start Thu Apr 9 2020 12:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47240 * 2 1 4 4 C 1.36778 * 119.99366 * 97.47401 * 3 2 1 5 5 H 1.08002 * 119.99812 * 160.19214 * 4 3 2 6 6 C 1.39092 * 120.00368 * 340.47157 * 4 3 2 7 7 N 1.31337 * 119.99747 * 355.99781 * 6 4 3 8 8 Si 1.86799 * 120.00073 * 176.00067 * 6 4 3 9 9 H 1.48501 * 109.47230 * 59.99656 * 8 6 4 10 10 H 1.48496 * 109.47186 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47078 * 299.99713 * 8 6 4 12 12 C 1.34769 * 120.00141 * 277.47537 * 3 2 1 13 13 O 1.21670 * 119.99674 * 177.53669 * 12 3 2 14 14 C 1.47140 * 120.00191 * 357.54027 * 12 3 2 15 15 N 1.30842 * 126.19223 * 7.44755 * 14 12 3 16 16 N 1.26261 * 116.22562 * 179.97438 * 15 14 12 17 17 C 1.29842 * 117.79532 * 359.97438 * 16 15 14 18 18 C 1.50707 * 125.53584 * 179.97438 * 17 16 15 19 19 S 1.71279 * 108.92785 * 359.76761 * 17 16 15 20 20 H 1.09005 * 109.46782 * 299.99385 * 1 2 3 21 21 H 1.08996 * 109.47008 * 59.99044 * 1 2 3 22 22 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46782 * 240.00615 * 2 1 3 24 24 H 1.08996 * 109.47751 * 120.00971 * 2 1 3 25 25 H 0.97005 * 119.99630 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.46776 * 90.02502 * 18 17 16 27 27 H 1.09001 * 109.46931 * 210.02286 * 18 17 16 28 28 H 1.08995 * 109.46953 * 330.02300 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3916 1.9745 1.1745 5 1 3.0354 2.8416 1.1608 6 6 1.9468 1.4577 2.3869 7 7 1.1060 0.4490 2.4017 8 14 2.5454 2.1985 3.9939 9 1 2.1607 3.6316 4.0520 10 1 1.9276 1.4740 5.1334 11 1 4.0235 2.0791 4.0737 12 6 2.0999 2.0672 -1.1572 13 8 2.4628 3.2285 -1.1517 14 6 1.7499 1.4118 -2.4272 15 7 1.2193 0.2235 -2.5629 16 7 0.9948 -0.1556 -3.7461 17 6 1.3053 0.6559 -4.7110 18 6 1.1142 0.3829 -6.1808 19 16 1.9620 2.0893 -4.0419 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8935 -0.5139 0.8898 25 1 0.7961 0.0883 3.2472 26 1 0.1286 0.7310 -6.4898 27 1 1.8803 0.9086 -6.7506 28 1 1.1954 -0.6883 -6.3649 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596920249.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:40 Heat of formation + Delta-G solvation = 52.226358 kcal Electronic energy + Delta-G solvation = -15332.230767 eV Core-core repulsion = 12704.934985 eV Total energy + Delta-G solvation = -2627.295782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55954 -38.43305 -35.22285 -32.88790 -31.87291 -29.52665 -28.78186 -25.63871 -24.60630 -22.31911 -21.27471 -19.10442 -18.42522 -17.03892 -16.04435 -15.35349 -15.09691 -14.20177 -13.99904 -13.72404 -13.11231 -13.02982 -12.80852 -12.56671 -12.26994 -11.79104 -11.38968 -11.17374 -10.89817 -10.53556 -10.35057 -10.13227 -9.96273 -9.58295 -9.23353 -9.11611 -8.98440 -8.69668 -7.89410 -6.57106 -4.07185 0.59936 1.35482 1.88231 2.79363 3.09734 3.10896 3.14107 3.88029 4.04008 4.36223 4.75938 4.94037 5.12619 5.26670 5.41783 5.72292 5.79301 5.99940 6.55070 6.76732 6.82683 7.08133 7.15607 7.40985 7.71599 7.82501 8.24447 8.85032 9.04116 9.09331 9.71848 10.30998 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.049297 B = 0.007285 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.848335 B = 3842.735431 C = 4318.682242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.108 3.892 3 N -0.380 5.380 4 C -0.279 4.279 5 H 0.111 0.889 6 C 0.029 3.971 7 N -0.840 5.840 8 Si 0.943 3.057 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.269 1.269 12 C 0.476 3.524 13 O -0.594 6.594 14 C 0.006 3.994 15 N -0.241 5.241 16 N -0.271 5.271 17 C -0.046 4.046 18 C -0.064 4.064 19 S 0.149 5.851 20 H 0.077 0.923 21 H 0.025 0.975 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.276 0.724 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -1.579 -8.681 8.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.015 4.015 3 N -0.094 5.094 4 C -0.410 4.410 5 H 0.129 0.871 6 C -0.178 4.178 7 N -0.477 5.477 8 Si 0.768 3.232 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.194 1.194 12 C 0.263 3.737 13 O -0.481 6.481 14 C -0.270 4.270 15 N -0.084 5.084 16 N -0.111 5.111 17 C -0.324 4.324 18 C -0.125 4.125 19 S 0.392 5.608 20 H 0.096 0.904 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.050 -1.440 -8.452 8.574 hybrid contribution 0.026 0.080 0.728 0.733 sum -0.023 -1.360 -7.724 7.843 Atomic orbital electron populations 1.21841 0.95949 0.99927 1.00787 1.21959 0.95447 0.81910 1.02150 1.43895 1.48747 1.11736 1.05035 1.20054 1.26331 1.12857 0.81799 0.87131 1.25643 0.95376 0.96350 1.00475 1.70095 1.27583 1.22168 1.27890 0.85723 0.79182 0.79346 0.78996 1.19287 1.20439 1.19359 1.16277 0.89951 0.86086 0.81384 1.90680 1.56342 1.15726 1.85362 1.30146 1.03153 0.94397 0.99312 1.72419 1.13914 1.10513 1.11556 1.71202 1.16908 1.28700 0.94311 1.29002 1.05279 0.95482 1.02669 1.20237 1.03031 1.03923 0.85307 1.84529 1.57596 1.18354 1.00290 0.90386 0.95593 0.94208 0.91921 0.87634 0.91276 0.89813 0.90281 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.10 37.16 0.34 -2.60 15 2 C 0.11 2.60 4.87 -4.04 -0.02 2.58 15 3 N -0.38 -9.96 2.64 -116.14 -0.31 -10.27 15 4 C -0.28 -7.41 9.36 -15.03 -0.14 -7.55 15 5 H 0.11 3.01 7.35 -52.49 -0.39 2.62 15 6 C 0.03 0.70 5.26 -17.45 -0.09 0.61 15 7 N -0.84 -20.44 7.93 55.50 0.44 -20.00 15 8 Si 0.94 19.14 29.56 -169.99 -5.02 14.12 15 9 H -0.27 -5.52 7.11 56.52 0.40 -5.11 15 10 H -0.28 -5.52 7.11 56.52 0.40 -5.11 15 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 12 C 0.48 12.44 7.55 -12.65 -0.10 12.35 15 13 O -0.59 -16.81 16.66 5.22 0.09 -16.72 15 14 C 0.01 0.14 7.05 -14.36 -0.10 0.04 15 15 N -0.24 -5.32 6.73 32.91 0.22 -5.09 15 16 N -0.27 -5.33 11.59 32.65 0.38 -4.95 15 17 C -0.05 -0.73 7.53 -13.12 -0.10 -0.83 15 18 C -0.06 -0.67 10.48 36.01 0.38 -0.29 15 19 S 0.15 2.63 23.13 -107.50 -2.49 0.15 15 20 H 0.08 1.93 6.25 -51.93 -0.32 1.60 15 21 H 0.03 0.60 6.71 -51.93 -0.35 0.25 15 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 1.48 5.58 -51.93 -0.29 1.19 15 24 H 0.11 2.62 5.87 -51.93 -0.30 2.31 15 25 H 0.28 6.28 8.31 -40.82 -0.34 5.95 15 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 15 LS Contribution 253.39 15.07 3.82 3.82 Total: -1.00 -29.37 253.39 -5.18 -34.55 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.48 Total: 0.10 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 0.17 Total: 4.30 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.73 Total: -40.31 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.09 Total: -16.72 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.49 Total: 0.15 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.37 -5.18 -34.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596920249.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.776 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds