Wall clock time and date at job start Thu Apr 9 2020 12:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36931 * 120.00558 * 2 1 4 4 H 1.08005 * 119.99919 * 39.89348 * 3 2 1 5 5 C 1.38811 * 120.00098 * 219.62244 * 3 2 1 6 6 N 1.31620 * 119.99780 * 15.57046 * 5 3 2 7 7 Si 1.86795 * 120.00089 * 195.57824 * 5 3 2 8 8 H 1.48498 * 109.47641 * 59.99372 * 7 5 3 9 9 H 1.48503 * 109.47405 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46979 * 299.99605 * 7 5 3 11 11 C 1.46502 * 119.99209 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47241 * 276.27418 * 11 2 1 13 13 C 1.38167 * 119.97832 * 98.43386 * 12 11 2 14 14 C 1.38702 * 119.96056 * 179.77262 * 13 12 11 15 15 O 1.35919 * 120.04475 * 180.23911 * 14 13 12 16 16 C 1.38745 * 119.91222 * 0.50304 * 14 13 12 17 17 C 1.38119 * 119.95686 * 359.75310 * 16 14 13 18 18 C 1.38341 * 119.98311 * 278.71345 * 12 11 2 19 19 Cl 1.73599 * 119.95543 * 0.02562 * 18 12 11 20 20 H 1.09002 * 109.46771 * 86.53337 * 1 2 3 21 21 H 1.08993 * 109.47875 * 206.54038 * 1 2 3 22 22 H 1.09000 * 109.46581 * 326.54248 * 1 2 3 23 23 H 0.97004 * 119.99551 * 179.97438 * 6 5 3 24 24 H 1.08992 * 109.47513 * 36.28063 * 11 2 1 25 25 H 1.09000 * 109.46837 * 156.28202 * 11 2 1 26 26 H 1.08003 * 120.02016 * 0.02562 * 13 12 11 27 27 H 0.96705 * 113.99801 * 270.27008 * 15 14 13 28 28 H 1.07995 * 120.02139 * 179.72516 * 16 14 13 29 29 H 1.08001 * 119.98104 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7984 2.0123 0.5999 5 6 3.2988 1.3238 -0.7666 6 7 3.5651 0.4518 -1.7159 7 14 4.4669 2.7468 -0.4509 8 1 4.9727 2.6723 0.9433 9 1 5.6094 2.6685 -1.3963 10 1 3.7475 4.0309 -0.6485 11 6 2.1974 -1.2688 0.0006 12 6 2.3140 -1.7809 1.4131 13 6 1.4365 -2.7440 1.8730 14 6 1.5471 -3.2185 3.1716 15 8 0.6879 -4.1694 3.6242 16 6 2.5327 -2.7172 4.0098 17 6 3.4047 -1.7506 3.5481 18 6 3.2959 -1.2823 2.2504 19 17 4.3923 -0.0666 1.6728 20 1 -0.3633 0.0621 -1.0258 21 1 -0.3634 -0.9193 0.4591 22 1 -0.3632 0.8574 0.5666 23 1 4.3679 0.5485 -2.2518 24 1 1.6616 -1.9979 -0.6072 25 1 3.1938 -1.1133 -0.4129 26 1 0.6674 -3.1301 1.2203 27 1 -0.1149 -3.8134 4.0292 28 1 2.6176 -3.0821 5.0226 29 1 4.1717 -1.3599 4.2003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599281974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:51 Heat of formation + Delta-G solvation = -21.641964 kcal Electronic energy + Delta-G solvation = -15413.046969 eV Core-core repulsion = 12748.211558 eV Total energy + Delta-G solvation = -2664.835411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.69836 -38.28219 -37.07328 -36.55624 -33.48394 -32.26678 -30.42011 -27.80715 -27.39810 -23.70094 -23.51788 -22.01027 -19.10817 -18.42822 -17.52710 -17.07145 -16.68287 -16.09588 -15.49623 -15.26297 -15.01821 -14.61139 -13.87549 -13.68765 -13.48803 -13.23658 -12.92278 -12.71221 -12.60366 -12.15924 -12.08228 -12.02417 -11.77041 -11.55934 -11.18378 -10.39740 -9.82694 -9.25529 -8.51119 -7.81070 -5.40965 0.21607 0.37637 1.28138 1.43531 1.47884 1.71251 2.49071 2.63339 3.30826 3.37628 3.91313 3.94237 4.02648 4.32219 4.55079 4.71855 4.78710 4.83957 4.97632 5.09038 5.15343 5.21066 5.42224 5.56470 5.71676 5.77727 5.81753 6.52426 6.88731 7.20695 7.85676 8.40027 9.19116 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.031809 B = 0.009846 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.037153 B = 2843.214039 C = 3415.227221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.596 5.596 3 C -0.253 4.253 4 H 0.047 0.953 5 C 0.003 3.997 6 N -0.914 5.914 7 Si 0.913 3.087 8 H -0.267 1.267 9 H -0.294 1.294 10 H -0.276 1.276 11 C 0.177 3.823 12 C -0.075 4.075 13 C -0.143 4.143 14 C 0.108 3.892 15 O -0.502 6.502 16 C -0.143 4.143 17 C -0.102 4.102 18 C -0.053 4.053 19 Cl -0.069 7.069 20 H 0.001 0.999 21 H 0.050 0.950 22 H 0.036 0.964 23 H 0.251 0.749 24 H 0.031 0.969 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.410 0.590 28 H 0.161 0.839 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 -6.314 11.128 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.317 5.317 3 C -0.383 4.383 4 H 0.064 0.936 5 C -0.195 4.195 6 N -0.557 5.557 7 Si 0.742 3.258 8 H -0.193 1.193 9 H -0.220 1.220 10 H -0.201 1.201 11 C 0.051 3.949 12 C -0.079 4.079 13 C -0.163 4.163 14 C 0.064 3.936 15 O -0.316 6.316 16 C -0.161 4.161 17 C -0.121 4.121 18 C -0.080 4.080 19 Cl -0.040 7.040 20 H 0.019 0.981 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.152 0.848 27 H 0.269 0.731 28 H 0.179 0.821 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.529 -6.567 10.714 12.819 hybrid contribution 0.453 1.296 -0.150 1.381 sum -2.075 -5.271 10.564 11.988 Atomic orbital electron populations 1.21109 0.83977 0.99373 0.97430 1.43768 1.00851 1.01590 1.85517 1.18925 1.07774 0.91537 1.20092 0.93574 1.25427 1.01045 0.98447 0.94605 1.69968 1.26715 1.38390 1.20672 0.86143 0.79877 0.81623 0.78204 1.19273 1.21981 1.20138 1.19897 1.00459 0.86062 0.88502 1.20897 0.93094 0.94355 0.99579 1.21349 1.00442 0.97629 0.96834 1.18463 0.93209 0.90211 0.91739 1.84754 1.34736 1.31930 1.80132 1.21461 0.96299 0.97149 1.01236 1.21130 1.00444 0.97357 0.93162 1.21156 0.95830 0.95585 0.95466 1.98393 1.62686 1.54030 1.88916 0.98069 0.93151 0.94577 0.93975 0.95018 0.89279 0.84767 0.73056 0.82114 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.28 10.71 127.77 1.37 6.65 15 2 N -0.60 -29.59 2.81 -731.32 -2.05 -31.64 15 3 C -0.25 -13.66 8.12 84.03 0.68 -12.98 15 4 H 0.05 2.55 7.88 -2.91 -0.02 2.52 15 5 C 0.00 0.15 3.51 84.86 0.30 0.45 15 6 N -0.91 -52.39 11.35 21.65 0.25 -52.14 15 7 Si 0.91 44.02 28.14 68.60 1.93 45.95 15 8 H -0.27 -12.44 6.98 99.48 0.69 -11.74 15 9 H -0.29 -14.27 7.11 99.48 0.71 -13.57 15 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 11 C 0.18 8.34 4.85 85.63 0.42 8.76 15 12 C -0.08 -3.03 5.45 -19.86 -0.11 -3.14 15 13 C -0.14 -4.76 9.61 22.36 0.21 -4.54 15 14 C 0.11 3.03 6.70 22.50 0.15 3.18 15 15 O -0.50 -11.23 13.50 -92.63 -1.25 -12.48 15 16 C -0.14 -3.74 9.99 22.36 0.22 -3.51 15 17 C -0.10 -3.14 9.82 22.28 0.22 -2.92 15 18 C -0.05 -2.07 6.31 22.33 0.14 -1.93 15 19 Cl -0.07 -3.03 22.73 -2.72 -0.06 -3.09 15 20 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 21 H 0.05 1.82 8.04 -2.39 -0.02 1.80 15 22 H 0.04 1.45 8.07 -2.39 -0.02 1.43 15 23 H 0.25 14.12 8.31 -92.70 -0.77 13.35 15 24 H 0.03 1.45 7.99 -2.39 -0.02 1.43 15 25 H 0.09 4.78 4.69 -2.39 -0.01 4.76 15 26 H 0.13 4.14 8.05 -2.91 -0.02 4.11 15 27 H 0.41 4.97 9.06 -74.05 -0.67 4.30 15 28 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 29 H 0.15 3.84 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -63.29 261.16 2.90 -60.39 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 0.48 Total: 3.01 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 3.60 Total: -9.99 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.81 Total: -83.78 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.25 Total: -12.48 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.93 Total: 45.95 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.06 Total: -3.09 kcal Total: -63.29 2.90 -60.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599281974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.750 kcal (2) G-P(sol) polarization free energy of solvation -63.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds