Wall clock time and date at job start Thu Apr 9 2020 12:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47221 * 2 1 4 4 C 1.50699 * 109.46989 * 119.99387 * 2 1 3 5 5 H 1.07997 * 120.00150 * 120.00093 * 4 2 1 6 6 C 1.37878 * 120.00267 * 300.00326 * 4 2 1 7 7 N 1.31518 * 120.00168 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00019 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46852 * 89.99933 * 8 6 4 10 10 H 1.48497 * 109.47343 * 209.99999 * 8 6 4 11 11 H 1.48496 * 109.46939 * 330.00365 * 8 6 4 12 12 N 1.46897 * 109.47395 * 239.99468 * 2 1 3 13 13 C 1.46901 * 110.99689 * 306.04982 * 12 2 1 14 14 C 1.46898 * 110.99699 * 70.00211 * 12 2 1 15 15 N 1.46506 * 109.47168 * 170.00145 * 14 12 2 16 16 C 1.37676 * 126.50264 * 259.69180 * 15 14 12 17 17 C 1.34386 * 106.96110 * 179.83702 * 16 15 14 18 18 N 1.34371 * 108.34046 * 0.42162 * 17 16 15 19 19 C 1.31269 * 109.30407 * 359.73437 * 18 17 16 20 20 S 1.76197 * 125.79980 * 179.97438 * 19 18 17 21 21 H 1.09006 * 109.47198 * 60.00249 * 1 2 3 22 22 H 1.08995 * 109.47420 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47151 * 300.00760 * 1 2 3 24 24 H 0.97000 * 119.99960 * 179.97438 * 7 6 4 25 25 H 1.09007 * 109.46690 * 183.95428 * 13 12 2 26 26 H 1.08998 * 109.46802 * 303.94848 * 13 12 2 27 27 H 1.08995 * 109.47238 * 63.95573 * 13 12 2 28 28 H 1.09001 * 109.47520 * 49.99950 * 14 12 2 29 29 H 1.09004 * 109.47151 * 290.00132 * 14 12 2 30 30 H 1.08006 * 126.52140 * 359.95800 * 16 15 14 31 31 H 1.07991 * 125.83213 * 180.11658 * 17 16 15 32 32 H 1.40994 * 100.00208 * 269.99717 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8588 3.5567 8 14 0.6257 1.2800 2.6541 9 1 -0.8022 0.8746 2.6992 10 1 0.9769 1.9956 3.9070 11 1 0.8490 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1993 13 6 1.4342 -2.0355 -1.3076 14 6 1.7530 0.0971 -2.4090 15 7 2.4573 -0.4994 -3.5467 16 6 3.6485 -0.0714 -4.0882 17 6 3.9353 -0.8985 -5.1079 18 7 2.9501 -1.8070 -5.2052 19 6 2.0551 -1.5783 -4.2725 20 16 0.5832 -2.5094 -4.0060 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 1.9038 -0.5271 4.4376 25 1 1.8664 -2.5522 -2.1646 26 1 1.6466 -2.5987 -0.3988 27 1 0.3556 -1.9521 -1.4398 28 1 2.1025 1.1188 -2.2604 29 1 0.6814 0.1052 -2.6087 30 1 4.2410 0.7681 -3.7555 31 1 4.8061 -0.8398 -5.7438 32 1 -0.3093 -1.7991 -4.8348 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743361882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:44 Heat of formation + Delta-G solvation = 95.923130 kcal Electronic energy + Delta-G solvation = -15687.407892 eV Core-core repulsion = 13197.840039 eV Total energy + Delta-G solvation = -2489.567854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.75070 -37.68553 -33.62642 -32.14432 -29.87024 -29.18249 -26.96362 -25.42122 -23.73365 -21.65203 -21.13406 -19.70995 -17.81250 -16.84185 -16.71826 -15.69417 -15.10509 -14.64222 -14.05859 -14.02257 -13.77043 -13.44313 -13.07247 -12.80113 -12.34280 -11.77952 -11.63826 -11.45252 -11.23967 -10.84406 -10.48547 -10.16490 -10.02028 -9.84022 -9.52116 -9.22844 -8.69646 -8.48841 -8.18335 -7.56604 -6.16246 -4.16013 1.25491 1.70514 2.54814 2.96762 3.16506 3.20577 3.24240 3.29879 4.28581 4.58192 4.80089 4.93598 5.13846 5.31633 5.38780 5.65711 5.89674 6.07608 6.10789 6.16279 6.25083 6.36129 6.53386 6.71655 6.81441 6.91803 7.03653 7.40872 7.67919 7.77345 7.94177 8.50436 8.91948 9.43607 10.96605 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.037814 B = 0.006886 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.293984 B = 4065.377418 C = 4266.452130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.189 3.811 3 H 0.041 0.959 4 C -0.505 4.505 5 H 0.084 0.916 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.295 1.295 11 H -0.269 1.269 12 N -0.531 5.531 13 C 0.031 3.969 14 C 0.263 3.737 15 N -0.424 5.424 16 C -0.008 4.008 17 C -0.040 4.040 18 N -0.450 5.450 19 C 0.172 3.828 20 S -0.014 6.014 21 H 0.026 0.974 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.265 0.735 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.179 0.821 31 H 0.173 0.827 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 2.852 -13.567 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.081 3.919 3 H 0.059 0.941 4 C -0.543 4.543 5 H 0.102 0.898 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.222 1.222 11 H -0.195 1.195 12 N -0.255 5.255 13 C -0.117 4.117 14 C 0.050 3.950 15 N -0.109 5.109 16 C -0.146 4.146 17 C -0.192 4.192 18 N -0.171 5.171 19 C -0.198 4.198 20 S 0.138 5.862 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.196 0.804 31 H 0.190 0.810 32 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.767 1.593 -13.462 13.835 hybrid contribution -1.030 2.629 0.079 2.825 sum -3.797 4.222 -13.383 14.538 Atomic orbital electron populations 1.22881 1.01163 1.01718 0.99056 1.19764 0.89027 0.95115 0.87967 0.94128 1.20842 1.31973 1.14047 0.87442 0.89804 1.24899 0.95807 0.96552 0.95749 1.69867 1.45287 1.40155 0.97938 0.86908 0.80635 0.83795 0.77071 1.20619 1.22249 1.19474 1.62147 1.59548 1.03244 1.00590 1.22596 0.97121 0.90217 1.01801 1.22437 0.94618 0.95729 0.82183 1.46424 1.18125 1.22507 1.23844 1.23038 0.89587 1.03623 0.98369 1.22379 1.00465 0.95243 1.01103 1.70850 1.02029 1.23729 1.20475 1.24075 1.02855 0.95475 0.97412 1.87255 0.99718 1.40579 1.58639 0.95452 0.91761 0.93294 0.92449 0.93038 0.89754 0.94487 0.87970 0.92003 0.80359 0.80954 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.75 7.92 37.15 0.29 -3.45 16 2 C 0.19 4.09 1.90 -68.87 -0.13 3.96 16 3 H 0.04 0.90 6.99 -51.93 -0.36 0.53 16 4 C -0.50 -13.40 8.49 -34.44 -0.29 -13.69 16 5 H 0.08 2.48 7.37 -52.49 -0.39 2.09 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 8 Si 0.89 20.70 24.37 -169.99 -4.14 16.56 16 9 H -0.28 -6.38 6.87 56.52 0.39 -6.00 16 10 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -5.93 6.53 56.52 0.37 -5.56 16 12 N -0.53 -10.27 4.84 -240.19 -1.16 -11.44 16 13 C 0.03 0.58 7.05 60.07 0.42 1.00 16 14 C 0.26 4.12 5.34 -63.31 -0.34 3.78 16 15 N -0.42 -6.59 2.91 -120.20 -0.35 -6.94 16 16 C -0.01 -0.10 11.59 -16.29 -0.19 -0.29 16 17 C -0.04 -0.55 11.84 -17.80 -0.21 -0.76 16 18 N -0.45 -7.50 11.29 -13.45 -0.15 -7.65 16 19 C 0.17 2.78 7.03 -88.75 -0.62 2.16 16 20 S -0.01 -0.20 21.80 -107.50 -2.34 -2.55 16 21 H 0.03 0.45 6.91 -51.93 -0.36 0.09 16 22 H 0.06 1.26 6.42 -51.93 -0.33 0.93 16 23 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.05 0.94 4.64 -40.31 -0.19 0.75 16 26 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 27 H 0.04 0.63 5.77 -51.93 -0.30 0.34 16 28 H 0.10 1.44 7.91 -51.93 -0.41 1.03 16 29 H 0.06 0.91 6.98 -51.93 -0.36 0.55 16 30 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.07 0.84 9.55 96.90 0.93 1.77 16 LS Contribution 263.28 15.07 3.97 3.97 Total: -1.00 -30.11 263.28 -6.90 -37.00 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -2.32 Total: 2.05 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.16 Total: -5.41 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.89 Total: -51.62 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.14 Total: 16.56 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.34 Total: -2.55 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.11 -6.90 -37.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743361882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.928 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds