Wall clock time and date at job start Thu Apr 9 2020 12:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47258 * 2 1 4 4 C 1.36760 * 127.14554 * 265.17651 * 3 2 1 5 5 N 1.30296 * 107.31529 * 180.26309 * 4 3 2 6 6 N 1.28517 * 110.07965 * 359.73985 * 5 4 3 7 7 C 1.31281 * 109.86239 * 359.97438 * 6 5 4 8 8 S 1.76193 * 126.48767 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47004 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00162 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99868 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47023 * 90.00014 * 16 14 12 18 18 H 1.48496 * 109.47251 * 210.00457 * 16 14 12 19 19 H 1.48498 * 109.47139 * 330.00202 * 16 14 12 20 20 H 1.09001 * 109.47005 * 60.00097 * 1 2 3 21 21 H 1.09005 * 109.47621 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47228 * 300.00290 * 1 2 3 23 23 H 1.09001 * 109.47228 * 239.99710 * 2 1 3 24 24 H 1.09004 * 109.47221 * 120.00638 * 2 1 3 25 25 H 1.07999 * 126.34073 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 27 27 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 28 28 H 1.09001 * 109.47194 * 299.99731 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99903 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.96996 * 119.99309 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3800 2.1292 -1.0863 5 7 2.7589 3.2953 -0.6453 6 7 2.6571 3.3372 0.6351 7 6 2.2032 2.1902 1.0843 8 16 1.8980 1.7713 2.7682 9 6 2.3810 3.3204 3.5701 10 6 2.1961 3.1907 5.0833 11 6 2.6037 4.5005 5.7610 12 6 2.4210 4.3730 7.2514 13 1 2.0507 3.4502 7.6731 14 6 2.7266 5.4343 8.0768 15 7 2.5666 5.3232 9.3775 16 14 3.3677 7.0301 7.3475 17 1 2.2250 7.9250 7.0332 18 1 4.2639 7.6967 8.3261 19 1 4.1238 6.7373 6.1035 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.3601 1.8106 -2.1180 26 1 1.7580 4.1329 3.1958 27 1 3.4270 3.5332 3.3491 28 1 1.1502 2.9778 5.3046 29 1 2.8192 2.3784 5.4572 30 1 3.6495 4.7138 5.5398 31 1 1.9802 5.3126 5.3870 32 1 2.7820 6.0698 9.9580 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750501127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:46 Heat of formation + Delta-G solvation = 59.708944 kcal Electronic energy + Delta-G solvation = -14438.979945 eV Core-core repulsion = 11947.841727 eV Total energy + Delta-G solvation = -2491.138219 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.92106 -35.97801 -34.64242 -32.11364 -30.87246 -30.77466 -28.06942 -24.73011 -23.43545 -22.54601 -21.98192 -20.18026 -18.04873 -16.79469 -16.40745 -16.12821 -15.42114 -14.75728 -14.72064 -14.34352 -13.82101 -13.50201 -12.80198 -12.60786 -12.21805 -12.15846 -11.89075 -11.64269 -11.34701 -10.89748 -10.84593 -10.45214 -10.30457 -10.11895 -9.94002 -9.76782 -9.66279 -9.22298 -8.53943 -7.65311 -6.04776 -4.03657 1.10930 1.54782 2.23556 2.47428 2.76240 3.33520 3.41037 3.45821 4.14736 4.37349 4.46264 4.48910 4.72700 5.03312 5.08788 5.20176 5.28795 5.39816 5.41896 5.56111 5.65015 5.84994 5.99559 6.32851 6.44768 6.56751 6.76345 7.23049 7.35784 7.76145 8.51357 8.55550 8.99022 9.57288 11.08406 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043568 B = 0.004594 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.517422 B = 6093.683898 C = 6625.042966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.469 5.469 4 C 0.150 3.850 5 N -0.290 5.290 6 N -0.294 5.294 7 C 0.166 3.834 8 S -0.020 6.020 9 C -0.093 4.093 10 C -0.090 4.090 11 C -0.006 4.006 12 C -0.522 4.522 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.264 1.264 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.219 0.781 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.016 0.984 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.140 -12.485 -20.676 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.164 5.164 4 C -0.140 4.140 5 N -0.129 5.129 6 N -0.138 5.138 7 C -0.208 4.208 8 S 0.210 5.790 9 C -0.241 4.241 10 C -0.129 4.129 11 C -0.046 4.046 12 C -0.560 4.560 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.188 1.188 20 H 0.082 0.918 21 H 0.100 0.900 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.235 0.765 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.010 -12.000 -20.072 23.579 hybrid contribution 0.305 0.629 -1.025 1.240 sum -2.705 -11.372 -21.097 24.119 Atomic orbital electron populations 1.22175 0.93417 1.03653 1.03748 1.21951 0.96254 0.78547 1.05261 1.46771 1.50121 1.13812 1.05708 1.26635 1.03179 0.89473 0.94737 1.73941 1.17994 1.17467 1.03472 1.74748 1.18923 1.17075 1.03086 1.27107 1.05495 0.91472 0.96753 1.85522 1.82593 1.24239 0.86663 1.23923 1.05736 0.94390 1.00076 1.21356 1.02182 1.01545 0.87862 1.19560 0.96573 0.91999 0.96445 1.21082 1.44404 1.01325 0.89219 0.90910 1.25006 0.94954 0.98691 0.94696 1.69913 1.49032 1.32107 1.03098 0.86794 0.79417 0.83823 0.79409 1.20199 1.21345 1.18829 0.91808 0.90007 0.91010 0.88220 0.88313 0.76465 0.88834 0.88846 0.91610 0.91582 0.96144 0.96583 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.15 0.38 -0.64 16 2 C 0.10 0.67 6.74 -4.05 -0.03 0.64 16 3 N -0.47 -5.11 2.81 -118.17 -0.33 -5.45 16 4 C 0.15 1.64 12.80 -88.95 -1.14 0.50 16 5 N -0.29 -4.55 12.17 29.90 0.36 -4.19 16 6 N -0.29 -5.10 11.60 30.68 0.36 -4.74 16 7 C 0.17 2.43 8.07 -88.34 -0.71 1.72 16 8 S -0.02 -0.28 21.93 -107.50 -2.36 -2.64 16 9 C -0.09 -1.55 5.23 37.16 0.19 -1.35 16 10 C -0.09 -1.72 5.16 -26.73 -0.14 -1.86 16 11 C -0.01 -0.15 4.04 -27.88 -0.11 -0.26 16 12 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 13 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 16 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 20 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 21 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.10 0.64 8.02 -51.93 -0.42 0.22 16 25 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 27 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 31 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -33.88 290.38 -8.05 -41.93 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -4.57 Total: -4.94 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.98 Total: -14.49 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 1.16 Total: -41.45 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.36 Total: -2.64 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.88 -8.05 -41.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750501127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.640 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds