Wall clock time and date at job start Thu Apr 9 2020 12:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47258 * 2 1 4 4 C 1.36760 * 127.14554 * 265.17651 * 3 2 1 5 5 N 1.30296 * 107.31529 * 180.26309 * 4 3 2 6 6 N 1.28517 * 110.07965 * 359.73985 * 5 4 3 7 7 C 1.31281 * 109.86239 * 359.97438 * 6 5 4 8 8 S 1.76193 * 126.48767 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47004 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00162 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99868 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47023 * 90.00014 * 16 14 12 18 18 H 1.48496 * 109.47251 * 210.00457 * 16 14 12 19 19 H 1.48498 * 109.47139 * 330.00202 * 16 14 12 20 20 H 1.09001 * 109.47005 * 60.00097 * 1 2 3 21 21 H 1.09005 * 109.47621 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47228 * 300.00290 * 1 2 3 23 23 H 1.09001 * 109.47228 * 239.99710 * 2 1 3 24 24 H 1.09004 * 109.47221 * 120.00638 * 2 1 3 25 25 H 1.07999 * 126.34073 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 27 27 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 28 28 H 1.09001 * 109.47194 * 299.99731 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99903 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.96996 * 119.99309 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3800 2.1292 -1.0863 5 7 2.7589 3.2953 -0.6453 6 7 2.6571 3.3372 0.6351 7 6 2.2032 2.1902 1.0843 8 16 1.8980 1.7713 2.7682 9 6 2.3810 3.3204 3.5701 10 6 2.1961 3.1907 5.0833 11 6 2.6037 4.5005 5.7610 12 6 2.4210 4.3730 7.2514 13 1 2.0507 3.4502 7.6731 14 6 2.7266 5.4343 8.0768 15 7 2.5666 5.3232 9.3775 16 14 3.3677 7.0301 7.3475 17 1 2.2250 7.9250 7.0332 18 1 4.2639 7.6967 8.3261 19 1 4.1238 6.7373 6.1035 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.3601 1.8106 -2.1180 26 1 1.7580 4.1329 3.1958 27 1 3.4270 3.5332 3.3491 28 1 1.1502 2.9778 5.3046 29 1 2.8192 2.3784 5.4572 30 1 3.6495 4.7138 5.5398 31 1 1.9802 5.3126 5.3870 32 1 2.7820 6.0698 9.9580 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750501127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:46 Heat of formation + Delta-G solvation = 39.852289 kcal Electronic energy + Delta-G solvation = -14439.840995 eV Core-core repulsion = 11947.841727 eV Total energy + Delta-G solvation = -2491.999268 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.88313 -36.76339 -36.39611 -34.18376 -31.81053 -31.53272 -29.92748 -25.57549 -25.01481 -23.54625 -22.99501 -21.84834 -19.10804 -18.70656 -17.41975 -17.09150 -16.49416 -16.26118 -16.16015 -15.41395 -15.02077 -14.58495 -14.13296 -13.96767 -13.83553 -13.39407 -13.09122 -12.74516 -12.49363 -12.41298 -12.05065 -11.82449 -11.65282 -11.58727 -11.36384 -11.33409 -11.21989 -11.06128 -10.76086 -8.75199 -8.29291 -6.33315 0.02205 0.62370 1.01313 1.37287 1.38887 1.50882 1.69430 1.75384 2.36605 3.06449 3.58961 3.74922 3.95563 3.96872 4.01505 4.16080 4.32944 4.43398 4.47735 4.69715 4.71844 4.83647 4.86837 5.01471 5.04674 5.20291 5.41500 5.50621 5.63902 5.82228 6.26958 6.74134 7.31434 7.55628 8.87227 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043568 B = 0.004594 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.517422 B = 6093.683898 C = 6625.042966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.462 5.462 4 C 0.177 3.823 5 N -0.342 5.342 6 N -0.338 5.338 7 C 0.147 3.853 8 S 0.017 5.983 9 C -0.092 4.092 10 C -0.079 4.079 11 C -0.007 4.007 12 C -0.532 4.532 13 H 0.038 0.962 14 C 0.008 3.992 15 N -0.949 5.949 16 Si 0.946 3.054 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.249 1.249 20 H 0.065 0.935 21 H 0.106 0.894 22 H 0.046 0.954 23 H 0.140 0.860 24 H 0.099 0.901 25 H 0.271 0.729 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -13.433 -23.534 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.156 5.156 4 C -0.114 4.114 5 N -0.180 5.180 6 N -0.182 5.182 7 C -0.229 4.229 8 S 0.246 5.754 9 C -0.241 4.241 10 C -0.119 4.119 11 C -0.046 4.046 12 C -0.570 4.570 13 H 0.056 0.944 14 C -0.189 4.189 15 N -0.590 5.590 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.172 1.172 20 H 0.084 0.916 21 H 0.125 0.875 22 H 0.065 0.935 23 H 0.158 0.842 24 H 0.117 0.883 25 H 0.286 0.714 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.013 -12.975 -22.945 26.531 hybrid contribution 0.241 0.752 -0.209 0.817 sum -2.772 -12.223 -23.155 26.329 Atomic orbital electron populations 1.22166 0.92928 1.04921 1.02606 1.22390 0.96609 0.76368 1.07310 1.47076 1.49124 1.14933 1.04493 1.27599 0.99494 0.87900 0.96408 1.73835 1.20794 1.20305 1.03083 1.74633 1.20438 1.18846 1.04301 1.27084 1.06303 0.91975 0.97587 1.85221 1.82504 1.21213 0.86442 1.23600 1.05475 0.96486 0.98560 1.21102 1.02004 0.99257 0.89528 1.19500 0.96810 0.94577 0.93709 1.21441 1.43581 1.00010 0.91940 0.94401 1.25945 0.95336 1.02681 0.94983 1.70057 1.50706 1.33524 1.04728 0.85720 0.79179 0.79088 0.79080 1.19182 1.20869 1.17242 0.91561 0.87538 0.93502 0.84236 0.88274 0.71367 0.89333 0.89378 0.91600 0.91588 0.95928 0.96057 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 71.98 0.74 -0.74 16 2 C 0.09 0.88 6.74 86.38 0.58 1.46 16 3 N -0.46 -8.82 2.81 -527.79 -1.48 -10.30 16 4 C 0.18 3.31 12.80 179.77 2.30 5.61 16 5 N -0.34 -10.31 12.17 -59.32 -0.72 -11.03 16 6 N -0.34 -11.55 11.60 -56.86 -0.66 -12.21 16 7 C 0.15 4.11 8.07 179.55 1.45 5.55 16 8 S 0.02 0.46 21.93 -56.49 -1.24 -0.78 16 9 C -0.09 -3.05 5.23 71.98 0.38 -2.67 16 10 C -0.08 -3.05 5.16 30.59 0.16 -2.89 16 11 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 12 C -0.53 -30.75 9.66 25.60 0.25 -30.51 16 13 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 14 C 0.01 0.45 5.47 84.65 0.46 0.91 16 15 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 16 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 20 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 21 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 24 H 0.10 0.97 8.02 -2.38 -0.02 0.95 16 25 H 0.27 1.69 8.06 -2.91 -0.02 1.67 16 26 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 31 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 32 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -75.90 290.38 5.55 -70.35 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: 1.04 Total: 0.09 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 6.43 Total: -23.46 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -2.57 Total: -93.17 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -1.24 Total: -0.78 kcal Total: -75.90 5.55 -70.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750501127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.204 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds