Wall clock time and date at job start Thu Apr 9 2020 12:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35732 * 117.00104 * 2 1 4 4 C 1.41847 * 126.77990 * 180.02562 * 3 2 1 5 5 C 1.36729 * 103.80044 * 179.73724 * 4 3 2 6 6 C 1.47405 * 126.88489 * 180.26116 * 5 4 3 7 7 O 1.21504 * 120.00430 * 0.02562 * 6 5 4 8 8 O 1.34780 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00401 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47073 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.47138 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99576 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00215 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99969 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00312 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47232 * 89.99576 * 15 13 11 17 17 H 1.48498 * 109.47230 * 209.99968 * 15 13 11 18 18 H 1.48503 * 109.46858 * 329.99983 * 15 13 11 19 19 O 1.34680 * 106.22734 * 0.23926 * 5 4 3 20 20 N 1.20874 * 111.63207 * 0.02562 * 19 5 4 21 21 H 1.08995 * 109.47016 * 60.00141 * 1 2 3 22 22 H 1.09006 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47106 * 300.00087 * 1 2 3 24 24 H 1.08002 * 128.10317 * 0.02562 * 4 3 2 25 25 H 1.08998 * 109.47003 * 299.99723 * 9 8 6 26 26 H 1.08998 * 109.46735 * 60.00220 * 9 8 6 27 27 H 1.09004 * 109.47125 * 299.99903 * 10 9 8 28 28 H 1.08990 * 109.47512 * 60.00085 * 10 9 8 29 29 H 0.96998 * 120.00134 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4503 -0.0005 5 6 3.5390 2.8142 -0.0064 6 6 4.7771 3.6141 -0.0147 7 8 5.8584 3.0599 -0.0175 8 8 4.7099 4.9602 -0.0193 9 6 5.9690 5.6832 -0.0269 10 6 5.6930 7.1880 -0.0306 11 6 6.9999 7.9385 -0.0391 12 1 7.9339 7.3962 -0.0412 13 6 7.0032 9.3172 -0.0431 14 7 5.8657 9.9775 -0.0400 15 14 8.6230 10.2474 -0.0529 16 1 9.0462 10.4897 -1.4556 17 1 8.4516 11.5473 0.6441 18 1 9.6591 9.4443 0.6449 19 8 2.2754 3.2803 -0.0035 20 7 1.4685 2.3804 0.0037 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.2442 0.7260 -0.0014 25 1 6.5434 5.4217 0.8618 26 1 6.5363 5.4153 -0.9182 27 1 5.1183 7.4499 -0.9190 28 1 5.1258 7.4556 0.8609 29 1 5.8680 10.9475 -0.0425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765949969.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:48 Heat of formation + Delta-G solvation = -58.005351 kcal Electronic energy + Delta-G solvation = -16290.445876 eV Core-core repulsion = 13183.324466 eV Total energy + Delta-G solvation = -3107.121410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.17854 -40.05026 -39.15709 -36.44991 -33.46437 -33.41241 -32.14488 -30.29853 -27.98005 -25.74139 -24.08870 -23.51812 -21.35321 -20.86648 -19.09556 -18.15853 -17.07730 -16.95483 -16.13989 -16.12146 -16.01025 -15.69715 -14.99194 -14.52736 -13.87284 -13.44209 -13.08550 -12.56892 -12.39464 -12.20729 -11.71556 -11.37365 -11.13664 -10.90654 -10.83239 -10.59628 -10.13537 -9.76384 -9.73281 -9.60404 -9.34627 -8.46709 -6.12466 -4.17543 0.47970 1.83395 2.24323 2.36251 2.70815 3.26947 3.27939 3.34503 3.38746 3.86274 4.37237 4.47914 4.73133 4.81847 4.91784 4.97089 5.15058 5.24214 5.39644 5.89130 5.98070 6.52213 6.59297 6.62614 7.46230 7.57616 7.66863 7.84178 7.95573 8.18789 8.87858 9.47133 10.98855 Molecular weight = 241.08amu Principal moments of inertia in cm(-1) A = 0.072107 B = 0.003816 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.215954 B = 7335.864212 C = 7698.319956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.201 3.799 4 C -0.152 4.152 5 C -0.027 4.027 6 C 0.548 3.452 7 O -0.481 6.481 8 O -0.337 6.337 9 C 0.074 3.926 10 C 0.023 3.977 11 C -0.528 4.528 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.901 3.099 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 O 0.139 5.861 20 N -0.386 5.386 21 H 0.061 0.939 22 H 0.107 0.893 23 H 0.061 0.939 24 H 0.194 0.806 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 -17.328 0.073 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.004 3.996 4 C -0.174 4.174 5 C -0.092 4.092 6 C 0.388 3.612 7 O -0.370 6.370 8 O -0.252 6.252 9 C 0.002 3.998 10 C -0.014 4.014 11 C -0.566 4.566 12 H 0.079 0.921 13 C -0.141 4.141 14 N -0.526 5.526 15 Si 0.728 3.272 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 O 0.070 5.930 20 N -0.107 5.107 21 H 0.080 0.920 22 H 0.125 0.875 23 H 0.080 0.920 24 H 0.211 0.789 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.478 -17.173 0.084 19.615 hybrid contribution 1.300 0.140 -0.016 1.308 sum -8.178 -17.033 0.068 18.894 Atomic orbital electron populations 1.23118 0.76474 1.04273 1.02629 1.86212 1.22839 1.20242 1.89447 1.21807 0.90467 0.85926 1.01368 1.22145 0.94715 0.94401 1.06114 1.22921 0.86274 0.92387 1.07627 1.19077 0.85133 0.82758 0.74190 1.90919 1.27315 1.73126 1.45615 1.86691 1.40483 1.16408 1.81660 1.23890 0.80096 0.94219 1.01573 1.19214 0.98356 0.84573 0.99262 1.20948 0.91840 0.91308 1.52537 0.92142 1.24985 0.96739 0.97608 0.94803 1.69975 1.25360 1.07807 1.49499 0.86454 0.83317 0.79178 0.78250 1.20473 1.21051 1.19705 1.85101 1.11460 1.29005 1.67399 1.74051 1.16102 0.96673 1.23921 0.92014 0.87462 0.92019 0.78921 0.91592 0.91589 0.95067 0.95053 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.31 15 2 O -0.28 -3.02 10.57 -18.90 -0.20 -3.22 15 3 C 0.20 2.50 7.99 -16.72 -0.13 2.37 15 4 C -0.15 -1.84 10.97 -38.75 -0.43 -2.27 15 5 C -0.03 -0.39 7.36 -36.40 -0.27 -0.66 15 6 C 0.55 9.22 7.96 34.46 0.27 9.49 15 7 O -0.48 -8.73 16.70 -19.27 -0.32 -9.05 15 8 O -0.34 -6.49 10.23 -41.47 -0.42 -6.92 15 9 C 0.07 1.56 5.42 37.16 0.20 1.76 15 10 C 0.02 0.58 5.35 -27.88 -0.15 0.44 15 11 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 15 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 14 N -0.89 -25.95 13.29 55.43 0.74 -25.22 15 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 15 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 19 O 0.14 2.05 11.22 15.45 0.17 2.23 15 20 N -0.39 -5.33 11.50 30.47 0.35 -4.98 15 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.11 0.47 8.14 -51.93 -0.42 0.05 15 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 15 24 H 0.19 1.87 8.06 -52.49 -0.42 1.45 15 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 27 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 275.82 15.07 4.16 4.16 Total: -1.00 -30.14 275.82 -3.30 -33.44 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -2.92 Total: -5.72 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 0.17 Total: -0.73 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 1.09 Total: -30.19 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.77 Total: -16.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.14 -3.30 -33.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765949969.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.561 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds