Wall clock time and date at job start Thu Apr 9 2020 12:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 F 1.39908 * 110.78166 * 147.08866 * 3 2 1 5 5 C 1.55162 * 110.72194 * 23.85018 * 3 2 1 6 6 C 1.55128 * 101.48434 * 205.96790 * 5 3 2 7 7 N 1.47419 * 104.72504 * 37.29928 * 6 5 3 8 8 C 1.34776 * 125.65003 * 155.81504 * 7 6 5 9 9 O 1.21585 * 119.99999 * 179.68951 * 8 7 6 10 10 N 1.34778 * 119.99898 * 359.69062 * 8 7 6 11 11 C 1.46493 * 119.99700 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.47128 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.47024 * 108.70183 * 335.54649 * 7 6 5 21 21 H 1.08997 * 111.00324 * 324.21035 * 5 3 2 22 22 H 1.09003 * 110.99838 * 88.02237 * 5 3 2 23 23 H 1.09001 * 110.49679 * 278.44853 * 6 5 3 24 24 H 1.09007 * 110.33610 * 156.06295 * 6 5 3 25 25 H 0.96998 * 120.00160 * 359.97438 * 10 8 7 26 26 H 1.09001 * 109.47786 * 60.00101 * 11 10 8 27 27 H 1.09006 * 109.47401 * 299.99686 * 11 10 8 28 28 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 29 29 H 1.09003 * 109.88108 * 120.70606 * 20 7 6 30 30 H 1.08992 * 109.88635 * 241.71859 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1039 1.0990 -0.7107 5 6 3.1576 -1.3264 -0.5868 6 6 4.5453 -1.4169 0.1007 7 7 4.3230 -0.8989 1.4629 8 6 5.0709 -1.1899 2.5457 9 8 4.7972 -0.6984 3.6236 10 7 6.1223 -2.0257 2.4336 11 6 6.9349 -2.3423 3.6107 12 6 8.0381 -3.2915 3.2190 13 1 8.1248 -3.6257 2.1956 14 6 8.9365 -3.7331 4.1670 15 7 8.8305 -3.3266 5.4132 16 14 10.3034 -4.9101 3.6815 17 1 11.1280 -5.2301 4.8743 18 1 9.7115 -6.1593 3.1387 19 1 11.1577 -4.2762 2.6454 20 6 3.1541 -0.0074 1.4434 21 1 2.5242 -2.1686 -0.3084 22 1 3.2629 -1.2606 -1.6697 23 1 5.2731 -0.7995 -0.4259 24 1 4.8823 -2.4528 0.1390 25 1 6.3405 -2.4180 1.5738 26 1 6.3078 -2.8086 4.3705 27 1 7.3687 -1.4256 4.0101 28 1 8.1205 -2.7157 5.6653 29 1 2.3912 -0.3813 2.1263 30 1 3.4512 0.9998 1.7354 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:51 Heat of formation + Delta-G solvation = -43.283965 kcal Electronic energy + Delta-G solvation = -16742.701796 eV Core-core repulsion = 13680.884293 eV Total energy + Delta-G solvation = -3061.817502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.45789 -39.91855 -37.74842 -36.47730 -34.50076 -32.61945 -31.40881 -29.63675 -26.83989 -24.35862 -22.73984 -22.44318 -19.71154 -19.22421 -18.28025 -17.00769 -16.21774 -15.81227 -15.60719 -15.36654 -14.62429 -14.00243 -13.87801 -13.79585 -13.55833 -13.33234 -13.16564 -12.89405 -12.78067 -12.22337 -12.11661 -11.92030 -11.83394 -11.34355 -11.02834 -10.80495 -10.17955 -9.73436 -8.83120 -8.81710 -8.64521 -7.97994 -6.53911 -4.27847 1.99947 2.05954 2.56261 3.12634 3.36427 3.37917 3.57150 3.57520 3.66463 3.72577 4.19414 4.40029 4.51436 4.68018 4.84790 5.19024 5.25193 5.29932 5.39234 5.46681 5.59000 6.09275 6.81017 6.81785 7.20660 7.23896 7.32743 7.72722 8.24259 8.52532 8.70541 9.08680 9.46111 10.86372 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.050823 B = 0.004633 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.797782 B = 6041.825354 C = 6309.622553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C 0.193 3.807 3 C 0.214 3.786 4 F -0.167 7.167 5 C -0.140 4.140 6 C 0.100 3.900 7 N -0.644 5.644 8 C 0.715 3.285 9 O -0.592 6.592 10 N -0.718 5.718 11 C 0.256 3.744 12 C -0.624 4.624 13 H 0.057 0.943 14 C 0.024 3.976 15 N -0.901 5.901 16 Si 1.076 2.924 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.286 1.286 20 C 0.121 3.879 21 H 0.105 0.895 22 H 0.111 0.889 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.390 0.610 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.273 0.727 29 H 0.089 0.911 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 3.537 -14.468 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.057 5.057 2 C -0.128 4.128 3 C 0.192 3.808 4 F -0.147 7.147 5 C -0.179 4.179 6 C -0.024 4.024 7 N -0.386 5.386 8 C 0.417 3.583 9 O -0.470 6.470 10 N -0.370 5.370 11 C 0.135 3.865 12 C -0.662 4.662 13 H 0.075 0.925 14 C -0.182 4.182 15 N -0.535 5.535 16 Si 0.903 3.097 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.005 4.005 21 H 0.123 0.877 22 H 0.129 0.871 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.223 0.777 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.640 3.054 -12.946 16.427 hybrid contribution -0.865 0.867 -1.191 1.708 sum -10.504 3.921 -14.137 18.043 Atomic orbital electron populations 1.81239 1.12114 1.05878 1.06429 1.28733 0.94412 0.94934 0.94676 1.18710 0.80913 0.86907 0.94292 1.93021 1.87422 1.54763 1.79536 1.23510 0.97442 0.94371 1.02589 1.22368 0.96009 1.01245 0.82763 1.47470 1.31724 1.51190 1.08218 1.15586 0.80067 0.80500 0.82134 1.90903 1.72819 1.57748 1.25579 1.45533 1.29342 1.47560 1.14529 1.19103 0.89052 0.95668 0.82683 1.22038 1.14881 1.31247 0.98014 0.92481 1.25869 1.00241 0.98908 0.93226 1.70759 1.33666 1.31357 1.17763 0.83443 0.75268 0.75320 0.75651 1.20563 1.21293 1.21271 1.22052 0.89390 0.97345 0.91718 0.87693 0.87102 0.90167 0.89144 0.77676 0.96585 0.96533 0.91636 0.89251 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.65 18.54 42.16 0.78 -3.87 16 2 C 0.19 1.93 14.31 -20.76 -0.30 1.63 16 3 C 0.21 1.88 1.49 -91.57 -0.14 1.74 16 4 F -0.17 -1.58 16.94 2.25 0.04 -1.54 16 5 C -0.14 -0.93 6.32 -24.46 -0.15 -1.08 16 6 C 0.10 0.91 6.59 -2.41 -0.02 0.90 16 7 N -0.64 -8.93 3.32 -176.10 -0.59 -9.52 16 8 C 0.72 14.08 8.49 -86.92 -0.74 13.34 16 9 O -0.59 -14.20 16.67 5.29 0.09 -14.11 16 10 N -0.72 -14.73 5.51 -66.41 -0.37 -15.09 16 11 C 0.26 6.61 4.74 -5.19 -0.02 6.59 16 12 C -0.62 -16.65 9.28 -34.44 -0.32 -16.97 16 13 H 0.06 1.43 7.60 -52.48 -0.40 1.03 16 14 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 15 N -0.90 -26.82 13.65 55.43 0.76 -26.06 16 16 Si 1.08 23.76 29.90 -169.99 -5.08 18.68 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 19 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.12 1.38 6.25 -3.06 -0.02 1.36 16 21 H 0.10 0.62 8.03 -51.93 -0.42 0.21 16 22 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.77 7.29 -51.93 -0.38 0.39 16 25 H 0.39 6.80 6.79 -40.82 -0.28 6.53 16 26 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 27 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 28 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 29 H 0.09 1.04 7.80 -51.93 -0.41 0.63 16 30 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 LS Contribution 273.92 15.07 4.13 4.13 Total: -1.00 -33.46 273.92 -5.11 -38.57 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.07 Total: 0.75 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -1.80 Total: 8.06 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.59 Total: -54.54 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.08 Total: 18.68 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.46 -5.11 -38.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.714 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds