Wall clock time and date at job start Thu Apr 9 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29947 * 126.28749 * 2 1 4 4 O 1.21301 * 110.25125 * 179.72375 * 3 2 1 5 5 C 1.33644 * 109.80774 * 0.47017 * 4 3 2 6 6 C 1.50703 * 126.54696 * 179.79834 * 5 4 3 7 7 N 1.46500 * 109.47299 * 269.68711 * 6 5 4 8 8 C 1.36939 * 119.99689 * 89.99954 * 7 6 5 9 9 H 1.08006 * 120.00287 * 9.93158 * 8 7 6 10 10 C 1.38809 * 120.00202 * 189.92925 * 8 7 6 11 11 N 1.31620 * 119.99984 * 24.64242 * 10 8 7 12 12 Si 1.86797 * 120.00413 * 204.64971 * 10 8 7 13 13 H 1.48498 * 109.47399 * 89.99555 * 12 10 8 14 14 H 1.48500 * 109.47239 * 210.00011 * 12 10 8 15 15 H 1.48504 * 109.46758 * 329.99514 * 12 10 8 16 16 C 1.46495 * 120.00213 * 270.00591 * 7 6 5 17 17 C 1.50699 * 109.47331 * 88.37979 * 16 7 6 18 18 O 1.20824 * 119.99727 * 0.02562 * 17 16 7 19 19 O 1.34235 * 119.99796 * 179.97438 * 17 16 7 20 20 N 1.31125 * 106.89762 * 359.53870 * 5 4 3 21 21 H 1.08993 * 109.47408 * 269.97319 * 1 2 3 22 22 H 1.09002 * 109.47424 * 29.97584 * 1 2 3 23 23 H 1.09004 * 109.47215 * 149.97036 * 1 2 3 24 24 H 1.08999 * 109.47178 * 29.69123 * 6 5 4 25 25 H 1.08999 * 109.47139 * 149.69084 * 6 5 4 26 26 H 0.97001 * 120.00226 * 180.02562 * 11 10 8 27 27 H 1.09002 * 109.46709 * 208.38514 * 16 7 6 28 28 H 1.09002 * 109.47170 * 328.37640 * 16 7 6 29 29 H 0.96700 * 116.99455 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0055 5 6 3.5298 -0.6212 -0.0007 6 6 4.7969 -1.4370 -0.0013 7 7 5.2071 -1.7010 -1.3826 8 6 6.0408 -0.8273 -2.0282 9 1 6.5234 -0.0339 -1.4767 10 6 6.2657 -0.9612 -3.3914 11 7 5.3720 -1.5596 -4.1501 12 14 7.8367 -0.2924 -4.1491 13 1 8.8847 -1.3442 -4.1248 14 1 7.5751 0.1136 -5.5534 15 1 8.2990 0.8852 -3.3713 16 6 4.7254 -2.8997 -2.0734 17 6 3.4136 -2.5964 -2.7504 18 8 2.9310 -1.4920 -2.6651 19 8 2.7820 -3.5528 -3.4491 20 7 2.3029 -1.0840 -0.0005 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3634 -0.8897 -0.5143 24 1 5.5843 -0.8855 0.5125 25 1 4.6208 -2.3821 0.5124 26 1 5.5293 -1.6535 -5.1027 27 1 5.4572 -3.2074 -2.8203 28 1 4.5840 -3.7034 -1.3507 29 1 1.9433 -3.3110 -3.8653 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833022669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:29 Heat of formation + Delta-G solvation = 5.543180 kcal Electronic energy + Delta-G solvation = -18105.986691 eV Core-core repulsion = 15033.913703 eV Total energy + Delta-G solvation = -3072.072988 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.55166 -38.70972 -36.13785 -35.09018 -34.40997 -32.67366 -31.12115 -28.74621 -27.83322 -26.44890 -23.18644 -22.34452 -20.76566 -19.97938 -17.30013 -16.96101 -16.77830 -16.44265 -15.34868 -15.24742 -14.17049 -14.14295 -13.72999 -13.51251 -13.22133 -13.13273 -12.38396 -12.06715 -11.65272 -11.47540 -11.19522 -11.00564 -10.71863 -10.55780 -10.31014 -10.18275 -10.12341 -9.96363 -9.30911 -9.05135 -8.69170 -7.47713 -6.15150 -3.46155 2.09228 3.10179 3.27743 3.35202 3.37262 3.82521 3.94741 4.21306 4.45562 4.50548 4.82619 5.08703 5.21327 5.61684 5.66743 5.82053 5.99788 6.08533 6.24478 6.25283 6.67031 6.84142 6.88984 6.93626 7.52493 7.86749 7.89312 8.76418 9.09317 9.35768 9.50712 9.81845 10.94862 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.009912 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.026591 B = 2824.162395 C = 3334.568756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.161 3.839 3 N -0.408 5.408 4 O 0.067 5.933 5 C 0.191 3.809 6 C 0.220 3.780 7 N -0.543 5.543 8 C -0.270 4.270 9 H 0.091 0.909 10 C 0.009 3.991 11 N -0.895 5.895 12 Si 0.919 3.081 13 H -0.282 1.282 14 H -0.292 1.292 15 H -0.276 1.276 16 C 0.183 3.817 17 C 0.482 3.518 18 O -0.510 6.510 19 O -0.544 6.544 20 N -0.495 5.495 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.262 0.738 27 H 0.120 0.880 28 H 0.060 0.940 29 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 -3.142 6.304 7.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 N -0.122 5.122 4 O 0.013 5.987 5 C -0.032 4.032 6 C 0.089 3.911 7 N -0.262 5.262 8 C -0.398 4.398 9 H 0.109 0.891 10 C -0.191 4.191 11 N -0.538 5.538 12 Si 0.748 3.252 13 H -0.209 1.209 14 H -0.218 1.218 15 H -0.201 1.201 16 C 0.055 3.945 17 C 0.321 3.679 18 O -0.395 6.395 19 O -0.354 6.354 20 N -0.230 5.230 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.463 -2.451 6.325 7.616 hybrid contribution -0.083 0.737 -1.292 1.489 sum -3.546 -1.715 5.033 6.392 Atomic orbital electron populations 1.19930 0.84512 1.03775 1.02910 1.25538 0.99774 0.84566 1.01359 1.74408 0.90071 1.24662 1.23037 1.85191 1.21679 1.25919 1.65942 1.31159 0.98602 0.81569 0.91915 1.20123 0.86186 0.95487 0.89306 1.44804 1.48823 1.23266 1.09297 1.19503 1.16333 1.12264 0.91727 0.89078 1.24928 0.98656 0.99802 0.95729 1.69892 1.31785 1.46706 1.05405 0.86014 0.82393 0.78628 0.78138 1.20880 1.21806 1.20071 1.20586 0.90650 0.87786 0.95512 1.24833 0.85860 0.82132 0.75061 1.90526 1.65904 1.23716 1.59313 1.84594 1.38777 1.46627 1.65388 1.71683 1.00078 1.29345 1.21894 0.90377 0.90464 0.89898 0.88889 0.88931 0.92768 0.86234 0.92212 0.76413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.80 10.51 36.00 0.38 -0.43 15 2 C 0.16 3.32 8.22 -156.38 -1.28 2.04 15 3 N -0.41 -9.11 12.16 30.90 0.38 -8.74 15 4 O 0.07 1.52 11.31 18.10 0.20 1.72 15 5 C 0.19 4.10 6.78 -13.06 -0.09 4.01 15 6 C 0.22 4.14 6.33 -5.19 -0.03 4.11 15 7 N -0.54 -12.32 2.10 -175.98 -0.37 -12.69 15 8 C -0.27 -6.77 9.70 -15.06 -0.15 -6.91 15 9 H 0.09 2.21 7.92 -52.48 -0.42 1.80 15 10 C 0.01 0.22 4.88 -17.43 -0.09 0.14 15 11 N -0.89 -24.33 9.08 55.49 0.50 -23.83 15 12 Si 0.92 20.56 29.62 -169.99 -5.03 15.52 15 13 H -0.28 -6.17 7.11 56.52 0.40 -5.76 15 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 16 C 0.18 4.05 5.57 -5.20 -0.03 4.02 15 17 C 0.48 11.51 6.45 36.01 0.23 11.74 15 18 O -0.51 -13.92 14.48 -18.75 -0.27 -14.19 15 19 O -0.54 -11.25 13.42 -39.27 -0.53 -11.78 15 20 N -0.49 -10.72 10.51 -9.87 -0.10 -10.83 15 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.09 1.51 8.03 -51.93 -0.42 1.09 15 25 H 0.09 1.45 7.91 -51.93 -0.41 1.04 15 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 27 H 0.12 2.82 6.27 -51.93 -0.33 2.50 15 28 H 0.06 1.11 7.91 -51.93 -0.41 0.70 15 29 H 0.38 6.51 9.10 45.56 0.41 6.93 15 LS Contribution 262.32 15.07 3.95 3.95 Total: -1.00 -32.95 262.32 -4.29 -37.25 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -1.97 Total: 4.91 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: -1.06 Total: 18.71 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.41 Total: -56.09 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.59 Total: -24.25 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.95 -4.29 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833022669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.791 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds