Wall clock time and date at job start Thu Apr 9 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29947 * 126.28749 * 2 1 4 4 O 1.21301 * 110.25125 * 179.72375 * 3 2 1 5 5 C 1.33644 * 109.80774 * 0.47017 * 4 3 2 6 6 C 1.50703 * 126.54696 * 179.79834 * 5 4 3 7 7 N 1.46500 * 109.47299 * 269.68711 * 6 5 4 8 8 C 1.36939 * 119.99689 * 89.99954 * 7 6 5 9 9 H 1.08006 * 120.00287 * 9.93158 * 8 7 6 10 10 C 1.38809 * 120.00202 * 189.92925 * 8 7 6 11 11 N 1.31620 * 119.99984 * 24.64242 * 10 8 7 12 12 Si 1.86797 * 120.00413 * 204.64971 * 10 8 7 13 13 H 1.48498 * 109.47399 * 89.99555 * 12 10 8 14 14 H 1.48500 * 109.47239 * 210.00011 * 12 10 8 15 15 H 1.48504 * 109.46758 * 329.99514 * 12 10 8 16 16 C 1.46495 * 120.00213 * 270.00591 * 7 6 5 17 17 C 1.50699 * 109.47331 * 88.37979 * 16 7 6 18 18 O 1.20824 * 119.99727 * 0.02562 * 17 16 7 19 19 O 1.34235 * 119.99796 * 179.97438 * 17 16 7 20 20 N 1.31125 * 106.89762 * 359.53870 * 5 4 3 21 21 H 1.08993 * 109.47408 * 269.97319 * 1 2 3 22 22 H 1.09002 * 109.47424 * 29.97584 * 1 2 3 23 23 H 1.09004 * 109.47215 * 149.97036 * 1 2 3 24 24 H 1.08999 * 109.47178 * 29.69123 * 6 5 4 25 25 H 1.08999 * 109.47139 * 149.69084 * 6 5 4 26 26 H 0.97001 * 120.00226 * 180.02562 * 11 10 8 27 27 H 1.09002 * 109.46709 * 208.38514 * 16 7 6 28 28 H 1.09002 * 109.47170 * 328.37640 * 16 7 6 29 29 H 0.96700 * 116.99455 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0055 5 6 3.5298 -0.6212 -0.0007 6 6 4.7969 -1.4370 -0.0013 7 7 5.2071 -1.7010 -1.3826 8 6 6.0408 -0.8273 -2.0282 9 1 6.5234 -0.0339 -1.4767 10 6 6.2657 -0.9612 -3.3914 11 7 5.3720 -1.5596 -4.1501 12 14 7.8367 -0.2924 -4.1491 13 1 8.8847 -1.3442 -4.1248 14 1 7.5751 0.1136 -5.5534 15 1 8.2990 0.8852 -3.3713 16 6 4.7254 -2.8997 -2.0734 17 6 3.4136 -2.5964 -2.7504 18 8 2.9310 -1.4920 -2.6651 19 8 2.7820 -3.5528 -3.4491 20 7 2.3029 -1.0840 -0.0005 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3634 -0.8897 -0.5143 24 1 5.5843 -0.8855 0.5125 25 1 4.6208 -2.3821 0.5124 26 1 5.5293 -1.6535 -5.1027 27 1 5.4572 -3.2074 -2.8203 28 1 4.5840 -3.7034 -1.3507 29 1 1.9433 -3.3110 -3.8653 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833022669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:29 Heat of formation + Delta-G solvation = -18.959667 kcal Electronic energy + Delta-G solvation = -18107.049214 eV Core-core repulsion = 15033.913703 eV Total energy + Delta-G solvation = -3073.135511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.18297 -40.51967 -37.84118 -36.69072 -36.23540 -34.36531 -32.87276 -30.16622 -29.48431 -28.21199 -24.93546 -24.00360 -22.42173 -21.66773 -19.02872 -18.72010 -18.53225 -18.11290 -17.14976 -16.99835 -15.96111 -15.75114 -15.43444 -15.19515 -14.74823 -14.35841 -13.86495 -13.53535 -13.39692 -13.19637 -12.94890 -12.60206 -12.37903 -12.18935 -12.08729 -11.97266 -11.80877 -11.74470 -11.17252 -10.71977 -10.55154 -9.30845 -8.06551 -5.38340 0.45463 1.48660 1.52023 1.55905 1.61611 2.10085 2.26571 2.45444 2.78589 3.00993 3.23228 3.35098 3.51089 4.26024 4.48608 4.57011 4.60629 4.67404 4.70496 4.89996 5.12163 5.15911 5.20370 5.33221 5.61595 6.06233 6.18029 6.88895 7.45104 7.53530 7.73675 7.96807 9.01727 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.009912 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.026591 B = 2824.162395 C = 3334.568756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.157 3.843 3 N -0.431 5.431 4 O 0.043 5.957 5 C 0.188 3.812 6 C 0.216 3.784 7 N -0.555 5.555 8 C -0.271 4.271 9 H 0.094 0.906 10 C -0.041 4.041 11 N -0.924 5.924 12 Si 0.977 3.023 13 H -0.273 1.273 14 H -0.308 1.308 15 H -0.270 1.270 16 C 0.181 3.819 17 C 0.482 3.518 18 O -0.550 6.550 19 O -0.537 6.537 20 N -0.506 5.506 21 H 0.109 0.891 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.129 0.871 26 H 0.253 0.747 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.266 -3.744 7.394 8.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.116 4.116 3 N -0.149 5.149 4 O -0.007 6.007 5 C -0.035 4.035 6 C 0.086 3.914 7 N -0.273 5.273 8 C -0.400 4.400 9 H 0.112 0.888 10 C -0.237 4.237 11 N -0.569 5.569 12 Si 0.805 3.195 13 H -0.199 1.199 14 H -0.236 1.236 15 H -0.195 1.195 16 C 0.053 3.947 17 C 0.324 3.676 18 O -0.438 6.438 19 O -0.348 6.348 20 N -0.242 5.242 21 H 0.128 0.872 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.136 0.864 25 H 0.146 0.854 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.559 -3.076 7.441 8.803 hybrid contribution -0.145 0.885 -1.570 1.808 sum -3.703 -2.191 5.871 7.279 Atomic orbital electron populations 1.20184 0.81078 1.04585 1.05208 1.26499 1.01848 0.83893 0.99377 1.74398 0.90154 1.25618 1.24728 1.85148 1.22165 1.26644 1.66716 1.31580 0.99427 0.81377 0.91139 1.20562 0.85889 0.97270 0.87697 1.44853 1.49131 1.23043 1.10287 1.19783 1.16500 1.11934 0.91825 0.88808 1.25593 1.00837 1.00940 0.96371 1.70033 1.33123 1.48891 1.04867 0.85125 0.79758 0.78342 0.76267 1.19907 1.23588 1.19523 1.20662 0.89290 0.88699 0.96091 1.25202 0.86128 0.81712 0.74590 1.90507 1.67110 1.25281 1.60908 1.84541 1.39680 1.45659 1.64914 1.71705 1.00366 1.29812 1.22291 0.87232 0.89492 0.89170 0.86419 0.85373 0.93798 0.87963 0.88301 0.74595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.47 10.51 71.23 0.75 -0.72 15 2 C 0.16 6.27 8.22 138.46 1.14 7.41 15 3 N -0.43 -19.01 12.16 -60.33 -0.73 -19.74 15 4 O 0.04 1.93 11.31 74.82 0.85 2.78 15 5 C 0.19 7.82 6.78 88.38 0.60 8.42 15 6 C 0.22 7.60 6.33 85.63 0.54 8.15 15 7 N -0.55 -24.29 2.10 -710.69 -1.49 -25.78 15 8 C -0.27 -13.36 9.70 84.03 0.81 -12.55 15 9 H 0.09 4.46 7.92 -2.91 -0.02 4.44 15 10 C -0.04 -2.12 4.88 84.86 0.41 -1.71 15 11 N -0.92 -50.59 9.08 21.65 0.20 -50.39 15 12 Si 0.98 42.33 29.62 68.60 2.03 44.36 15 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 14 H -0.31 -14.09 7.11 99.48 0.71 -13.38 15 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 16 C 0.18 7.73 5.57 85.63 0.48 8.21 15 17 C 0.48 22.56 6.45 71.24 0.46 23.02 15 18 O -0.55 -29.81 14.48 21.97 0.32 -29.49 15 19 O -0.54 -21.53 13.42 -51.47 -0.69 -22.22 15 20 N -0.51 -21.16 10.51 -303.20 -3.19 -24.35 15 21 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.09 2.26 8.14 -2.39 -0.02 2.25 15 23 H 0.09 2.40 8.14 -2.38 -0.02 2.38 15 24 H 0.12 3.52 8.03 -2.39 -0.02 3.50 15 25 H 0.13 3.57 7.91 -2.39 -0.02 3.55 15 26 H 0.25 13.75 8.31 -92.71 -0.77 12.98 15 27 H 0.10 4.77 6.27 -2.39 -0.01 4.76 15 28 H 0.10 3.38 7.91 -2.39 -0.02 3.36 15 29 H 0.40 13.08 9.10 -74.06 -0.67 12.40 15 Total: -1.00 -70.23 262.32 3.01 -67.22 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.52 Total: 17.39 kcal Atomic # 6 Polarization: 35.03 SS G_CDS: 5.19 Total: 40.22 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -5.21 Total: -120.26 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: 0.47 Total: -48.93 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.23 3.01 -67.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833022669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.259 kcal (2) G-P(sol) polarization free energy of solvation -70.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds