Wall clock time and date at job start Thu Apr 9 2020 12:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48502 * 109.47374 * 270.00335 * 3 2 1 5 5 H 1.48502 * 109.47111 * 30.00494 * 3 2 1 6 6 H 1.48506 * 109.47053 * 149.99923 * 3 2 1 7 7 C 1.37876 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00016 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.46907 * 110.99745 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46881 * 35.00035 * 11 10 9 13 13 C 1.53001 * 109.46686 * 155.00087 * 11 10 9 14 14 C 1.52998 * 109.47044 * 294.99714 * 13 11 10 15 15 O 1.42905 * 109.46763 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46896 * 275.00045 * 11 10 9 17 17 C 1.33387 * 125.20287 * 140.00261 * 16 11 10 18 18 C 1.38427 * 114.91991 * 179.75128 * 17 16 11 19 19 C 1.33381 * 114.92374 * 0.25034 * 18 17 16 20 20 S 1.75886 * 125.20508 * 320.13715 * 16 11 10 21 21 H 0.97001 * 119.99675 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47241 * 59.99349 * 9 7 2 23 23 H 1.09000 * 109.46956 * 299.99559 * 9 7 2 24 24 H 1.00896 * 110.99864 * 56.04733 * 10 9 7 25 25 H 1.09001 * 109.47533 * 55.00267 * 13 11 10 26 26 H 1.09005 * 109.46479 * 174.99844 * 13 11 10 27 27 H 1.09000 * 109.46952 * 300.00013 * 14 13 11 28 28 H 1.08994 * 109.47344 * 60.00178 * 14 13 11 29 29 H 0.96698 * 113.99782 * 180.02562 * 15 14 13 30 30 H 1.08002 * 122.54190 * 0.02679 * 17 16 11 31 31 H 1.08001 * 122.53885 * 180.22673 * 18 17 16 32 32 H 1.08001 * 125.20464 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 1 0.5920 -4.8252 -0.5880 13 6 2.4114 -5.9787 -0.6085 14 6 2.6630 -5.6555 -2.0826 15 8 3.5088 -6.6568 -2.6521 16 6 1.1575 -5.2891 1.4168 17 6 0.0125 -5.8550 1.8013 18 6 -0.0803 -6.1212 3.1565 19 6 0.9871 -5.7666 3.8734 20 16 2.1980 -5.0540 2.8153 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8405 -3.5486 0.7819 25 1 3.3609 -5.9990 -0.0736 26 1 1.9278 -6.9523 -0.5274 27 1 1.7135 -5.6353 -2.6174 28 1 3.1465 -4.6820 -2.1637 29 1 3.7112 -6.5154 -3.5870 30 1 -0.7803 -6.0919 1.1071 31 1 -0.9513 -6.5808 3.5999 32 1 1.0918 -5.8969 4.9404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843084457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:45 Heat of formation + Delta-G solvation = -49.019860 kcal Electronic energy + Delta-G solvation = -14984.382663 eV Core-core repulsion = 12456.236859 eV Total energy + Delta-G solvation = -2528.145804 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52052 -37.95320 -36.98601 -34.92439 -32.46171 -30.31228 -28.38957 -25.96289 -24.12917 -23.54506 -22.01992 -20.21867 -18.73133 -18.48806 -17.68020 -16.91281 -16.46366 -16.32643 -15.37154 -15.02802 -14.86079 -14.68798 -14.04045 -13.62464 -13.51849 -13.45062 -13.09427 -12.97717 -12.69054 -12.48347 -12.36694 -12.04199 -11.90909 -11.56677 -11.30184 -10.81263 -10.66957 -9.60044 -9.43021 -9.23753 -8.22424 -6.33122 0.08918 0.69461 1.10822 1.40997 1.42132 1.53395 1.84880 2.39555 3.11258 3.26979 3.48302 3.92999 4.13301 4.23258 4.33849 4.45294 4.55401 4.66148 4.69126 4.87116 5.05258 5.12316 5.14904 5.21964 5.31734 5.37532 5.55446 5.62710 6.00128 6.34719 6.60808 6.85301 6.93533 7.37230 8.88861 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.007859 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.228460 B = 3561.789673 C = 4669.714169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.215 3.785 10 N -0.672 5.672 11 C 0.156 3.844 12 H 0.082 0.918 13 C -0.088 4.088 14 C 0.086 3.914 15 O -0.592 6.592 16 C -0.211 4.211 17 C -0.148 4.148 18 C -0.139 4.139 19 C -0.216 4.216 20 S 0.078 5.922 21 H 0.265 0.735 22 H 0.004 0.996 23 H -0.039 1.039 24 H 0.331 0.669 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.396 0.604 30 H 0.148 0.852 31 H 0.166 0.834 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -12.721 2.767 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.087 3.913 10 N -0.301 5.301 11 C 0.044 3.956 12 H 0.100 0.900 13 C -0.127 4.127 14 C 0.009 3.991 15 O -0.400 6.400 16 C -0.330 4.330 17 C -0.179 4.179 18 C -0.169 4.169 19 C -0.351 4.351 20 S 0.341 5.659 21 H 0.073 0.927 22 H 0.022 0.978 23 H -0.021 1.021 24 H 0.149 0.851 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.245 0.755 30 H 0.166 0.834 31 H 0.183 0.817 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.717 -12.215 2.905 13.094 hybrid contribution -1.692 0.676 0.145 1.828 sum 2.024 -11.539 3.050 12.106 Atomic orbital electron populations 1.70089 1.07694 1.27907 1.51432 1.25890 0.95741 1.03168 0.94611 0.85390 0.78553 0.78227 0.78490 1.19749 1.20779 1.18874 1.21504 0.93714 0.91425 1.50663 0.91918 1.19173 0.90397 0.88359 0.93333 1.60825 1.19674 1.00953 1.48694 1.20147 0.97118 0.89820 0.88535 0.90031 1.21347 0.99359 0.97152 0.94808 1.21973 0.93288 0.90596 0.93260 1.86358 1.71036 1.51428 1.31203 1.25622 0.99612 1.07554 1.00176 1.20445 0.97834 1.02324 0.97311 1.20434 1.00354 1.03240 0.92888 1.25953 0.97657 1.07123 1.04393 1.84257 1.21277 1.61371 0.98996 0.92668 0.97784 1.02093 0.85056 0.91950 0.90435 0.93449 0.93207 0.75490 0.83411 0.81671 0.79280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -30.42 9.32 25.60 0.24 -30.18 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.21 11.42 5.23 85.56 0.45 11.87 16 10 N -0.67 -28.75 5.69 -499.45 -2.84 -31.59 16 11 C 0.16 5.57 2.42 44.17 0.11 5.67 16 12 H 0.08 3.02 7.78 -2.39 -0.02 3.00 16 13 C -0.09 -2.72 5.24 30.59 0.16 -2.56 16 14 C 0.09 2.55 6.93 71.98 0.50 3.05 16 15 O -0.59 -15.76 13.66 -148.98 -2.04 -17.79 16 16 C -0.21 -7.09 5.21 24.59 0.13 -6.96 16 17 C -0.15 -4.44 10.04 21.22 0.21 -4.22 16 18 C -0.14 -3.56 10.18 21.22 0.22 -3.35 16 19 C -0.22 -5.53 11.23 66.72 0.75 -4.78 16 20 S 0.08 2.43 22.03 -56.49 -1.24 1.19 16 21 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 22 H 0.00 0.23 8.06 -2.39 -0.02 0.21 16 23 H -0.04 -2.25 8.00 -2.39 -0.02 -2.27 16 24 H 0.33 14.07 7.29 -89.70 -0.65 13.41 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.65 7.75 -2.39 -0.02 1.63 16 29 H 0.40 6.71 9.12 -74.06 -0.68 6.03 16 30 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 31 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -66.04 289.51 -0.79 -66.84 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.21 Total: 21.57 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 3.22 Total: -30.75 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.56 Total: -87.36 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -2.04 Total: -17.79 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.24 Total: 1.19 kcal Total: -66.04 -0.79 -66.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843084457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.817 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds