Wall clock time and date at job start Thu Apr 9 2020 12:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99627 * 2 1 4 4 H 1.48498 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47026 * 300.00221 * 3 2 1 6 6 H 1.48505 * 109.46989 * 59.99719 * 3 2 1 7 7 C 1.38797 * 120.00726 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00403 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99421 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99815 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47289 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00082 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00022 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99633 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.58416 * 9.22506 * 14 13 11 16 16 C 1.53126 * 117.50681 * 223.45570 * 14 13 11 17 17 C 1.52459 * 117.50963 * 154.99741 * 14 13 11 18 18 C 1.53260 * 128.58747 * 349.84713 * 17 14 13 19 19 C 1.53889 * 86.97989 * 194.93106 * 18 17 14 20 20 C 1.53447 * 128.65734 * 225.07051 * 17 14 13 21 21 H 0.96995 * 120.00841 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47383 * 59.99810 * 10 9 7 23 23 H 1.09003 * 109.47136 * 300.00466 * 10 9 7 24 24 H 0.96996 * 119.99609 * 359.97438 * 13 11 10 25 25 H 1.09004 * 117.50883 * 145.10704 * 16 14 13 26 26 H 1.08991 * 117.55075 * 359.97438 * 16 14 13 27 27 H 1.09002 * 113.64852 * 80.38772 * 18 17 14 28 28 H 1.08999 * 113.64512 * 309.47402 * 18 17 14 29 29 H 1.09005 * 113.58717 * 139.53029 * 19 18 17 30 30 H 1.08999 * 113.59117 * 270.34026 * 19 18 17 31 31 H 1.08995 * 113.56108 * 50.51775 * 20 17 14 32 32 H 1.09000 * 113.78120 * 279.55299 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0105 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9878 -5.3026 -0.0012 12 8 0.7916 -5.5023 -0.0011 13 7 2.8447 -6.3430 -0.0008 14 6 2.3309 -7.7150 -0.0019 15 1 1.2573 -7.8154 -0.1607 16 6 3.0053 -8.7234 0.9324 17 6 3.2323 -8.8039 -0.5730 18 6 4.5433 -8.6488 -1.3515 19 6 4.3805 -10.1235 -1.7599 20 6 2.8688 -9.9412 -1.5369 21 1 -0.4851 0.8399 0.0004 22 1 3.1248 -3.7312 0.8894 23 1 3.1248 -3.7311 -0.8905 24 1 3.8014 -6.1832 -0.0004 25 1 2.3750 -9.4871 1.3881 26 1 3.8311 -8.3666 1.5476 27 1 5.4097 -8.4641 -0.7164 28 1 4.4753 -7.9534 -2.1881 29 1 4.6476 -10.3207 -2.7982 30 1 4.8431 -10.8227 -1.0633 31 1 2.3332 -9.6054 -2.4248 32 1 2.3926 -10.7932 -1.0518 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874788684.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:13 Heat of formation + Delta-G solvation = 4.184769 kcal Electronic energy + Delta-G solvation = -14428.091829 eV Core-core repulsion = 11902.253151 eV Total energy + Delta-G solvation = -2525.838679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.02084 -38.53161 -34.77807 -32.42991 -32.02513 -28.86821 -25.91310 -25.49159 -23.24521 -22.15686 -20.34566 -18.60612 -17.80089 -16.46380 -16.32599 -15.45716 -14.87384 -14.81116 -14.80243 -14.16407 -13.34282 -12.90675 -12.68345 -12.61028 -12.39820 -12.02061 -11.74791 -11.58044 -11.07101 -11.01999 -10.76875 -10.69779 -10.50654 -10.03339 -9.78802 -9.40948 -9.07429 -8.52222 -8.23391 -6.50010 -6.21737 -3.92342 2.96736 2.98823 3.21718 3.27523 3.32095 3.64607 3.71381 4.20263 4.36193 4.46113 4.59467 4.66698 4.72529 5.09969 5.13541 5.16542 5.47778 5.49932 5.54690 5.60688 5.61465 5.66645 5.80903 5.88182 5.97052 6.09971 6.13449 6.15542 6.67299 7.59945 7.70989 8.35477 8.60349 9.23689 10.85761 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.056417 B = 0.004194 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.184621 B = 6674.999630 C = 6919.558230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.708 5.708 14 C 0.105 3.895 15 H 0.137 0.863 16 C -0.163 4.163 17 C -0.174 4.174 18 C -0.101 4.101 19 C -0.136 4.136 20 C -0.098 4.098 21 H 0.268 0.732 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.399 0.601 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.023 -17.610 -1.392 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.390 6.390 13 N -0.359 5.359 14 C -0.002 4.002 15 H 0.154 0.846 16 C -0.202 4.202 17 C -0.175 4.175 18 C -0.138 4.138 19 C -0.173 4.173 20 C -0.135 4.135 21 H 0.078 0.922 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.233 0.767 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.843 -17.798 -1.395 19.499 hybrid contribution 2.482 1.333 0.086 2.818 sum 10.324 -16.465 -1.309 19.478 Atomic orbital electron populations 1.70026 1.05955 1.27361 1.46939 1.24995 0.95027 0.99042 0.94524 0.86111 0.79577 0.81858 0.77905 1.19618 1.20553 1.20560 1.22913 0.94960 0.91638 1.58861 0.90859 1.85410 1.04858 0.96313 1.96714 1.23530 1.06638 0.95202 1.04988 1.20333 0.86515 0.86160 0.74787 1.90692 1.15370 1.85498 1.47421 1.45373 1.09696 1.04155 1.76698 1.21477 0.97839 0.78716 1.02167 0.84589 1.23357 1.03481 1.02405 0.90947 1.22870 0.99062 1.00122 0.95460 1.22409 0.95084 0.97128 0.99166 1.22723 0.96544 0.96712 1.01349 1.22476 0.96532 0.96312 0.98190 0.92226 0.89149 0.89163 0.76736 0.87990 0.88413 0.91502 0.89574 0.91360 0.90203 0.89611 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.54 10.20 7.85 -10.99 -0.09 10.11 16 12 O -0.52 -11.90 15.43 5.56 0.09 -11.82 16 13 N -0.71 -9.95 5.55 -54.01 -0.30 -10.25 16 14 C 0.10 1.33 6.43 -68.14 -0.44 0.89 16 15 H 0.14 1.98 7.40 -51.93 -0.38 1.60 16 16 C -0.16 -1.62 10.46 -26.94 -0.28 -1.90 16 17 C -0.17 -1.71 3.03 -154.70 -0.47 -2.18 16 18 C -0.10 -0.87 8.07 -26.13 -0.21 -1.08 16 19 C -0.14 -1.03 8.08 -25.81 -0.21 -1.24 16 20 C -0.10 -0.84 8.10 -26.04 -0.21 -1.05 16 21 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 23 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 24 H 0.40 4.51 8.83 -40.82 -0.36 4.15 16 25 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -33.31 292.58 -8.31 -41.62 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.52 Total: 1.32 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.49 Total: -12.36 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.43 Total: -35.75 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.31 -8.31 -41.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874788684.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.805 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds