Wall clock time and date at job start Thu Apr 9 2020 12:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99627 * 2 1 4 4 H 1.48498 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47026 * 300.00221 * 3 2 1 6 6 H 1.48505 * 109.46989 * 59.99719 * 3 2 1 7 7 C 1.38797 * 120.00726 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00403 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99421 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99815 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47289 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00082 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00022 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99633 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.58416 * 9.22506 * 14 13 11 16 16 C 1.53126 * 117.50681 * 223.45570 * 14 13 11 17 17 C 1.52459 * 117.50963 * 154.99741 * 14 13 11 18 18 C 1.53260 * 128.58747 * 349.84713 * 17 14 13 19 19 C 1.53889 * 86.97989 * 194.93106 * 18 17 14 20 20 C 1.53447 * 128.65734 * 225.07051 * 17 14 13 21 21 H 0.96995 * 120.00841 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47383 * 59.99810 * 10 9 7 23 23 H 1.09003 * 109.47136 * 300.00466 * 10 9 7 24 24 H 0.96996 * 119.99609 * 359.97438 * 13 11 10 25 25 H 1.09004 * 117.50883 * 145.10704 * 16 14 13 26 26 H 1.08991 * 117.55075 * 359.97438 * 16 14 13 27 27 H 1.09002 * 113.64852 * 80.38772 * 18 17 14 28 28 H 1.08999 * 113.64512 * 309.47402 * 18 17 14 29 29 H 1.09005 * 113.58717 * 139.53029 * 19 18 17 30 30 H 1.08999 * 113.59117 * 270.34026 * 19 18 17 31 31 H 1.08995 * 113.56108 * 50.51775 * 20 17 14 32 32 H 1.09000 * 113.78120 * 279.55299 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0105 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9878 -5.3026 -0.0012 12 8 0.7916 -5.5023 -0.0011 13 7 2.8447 -6.3430 -0.0008 14 6 2.3309 -7.7150 -0.0019 15 1 1.2573 -7.8154 -0.1607 16 6 3.0053 -8.7234 0.9324 17 6 3.2323 -8.8039 -0.5730 18 6 4.5433 -8.6488 -1.3515 19 6 4.3805 -10.1235 -1.7599 20 6 2.8688 -9.9412 -1.5369 21 1 -0.4851 0.8399 0.0004 22 1 3.1248 -3.7312 0.8894 23 1 3.1248 -3.7311 -0.8905 24 1 3.8014 -6.1832 -0.0004 25 1 2.3750 -9.4871 1.3881 26 1 3.8311 -8.3666 1.5476 27 1 5.4097 -8.4641 -0.7164 28 1 4.4753 -7.9534 -2.1881 29 1 4.6476 -10.3207 -2.7982 30 1 4.8431 -10.8227 -1.0633 31 1 2.3332 -9.6054 -2.4248 32 1 2.3926 -10.7932 -1.0518 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874788684.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:13 Heat of formation + Delta-G solvation = -17.935964 kcal Electronic energy + Delta-G solvation = -14429.051056 eV Core-core repulsion = 11902.253151 eV Total energy + Delta-G solvation = -2526.797906 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07557 -39.76783 -35.86096 -34.59087 -33.21640 -30.40292 -27.67813 -26.59164 -23.92146 -23.25363 -21.71815 -19.93011 -19.26112 -17.96329 -17.44826 -16.88629 -16.41497 -16.09089 -16.00537 -15.75240 -14.84878 -14.55408 -13.94594 -13.67583 -13.28355 -13.18385 -13.16440 -12.91356 -12.60738 -12.44998 -12.30860 -11.74018 -11.66170 -11.22155 -11.16193 -11.02244 -10.77491 -10.28751 -9.62238 -8.67935 -8.35251 -6.13850 1.25116 1.41706 1.45977 1.52261 1.57783 2.17103 2.26882 2.82673 2.99072 3.29447 3.56174 3.70008 3.76488 3.89370 3.95032 3.97893 4.28267 4.47824 4.51795 4.67105 4.84311 4.86143 4.86715 4.96138 5.10269 5.11790 5.38876 5.41695 5.50591 5.52049 6.19614 6.46650 7.06063 7.20943 8.74327 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.056417 B = 0.004194 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.184621 B = 6674.999630 C = 6919.558230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.536 3.464 12 O -0.566 6.566 13 N -0.682 5.682 14 C 0.066 3.934 15 H 0.109 0.891 16 C -0.144 4.144 17 C -0.161 4.161 18 C -0.102 4.102 19 C -0.126 4.126 20 C -0.103 4.103 21 H 0.271 0.729 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.415 0.585 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.935 -18.387 -1.321 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.444 6.444 13 N -0.333 5.333 14 C -0.040 4.040 15 H 0.127 0.873 16 C -0.182 4.182 17 C -0.163 4.163 18 C -0.139 4.139 19 C -0.163 4.163 20 C -0.141 4.141 21 H 0.080 0.920 22 H 0.129 0.871 23 H 0.129 0.871 24 H 0.252 0.748 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.811 -18.624 -1.325 21.575 hybrid contribution 1.611 1.411 0.055 2.142 sum 12.422 -17.212 -1.270 21.264 Atomic orbital electron populations 1.70188 1.08009 1.28596 1.48024 1.26142 0.95967 1.03354 0.93673 0.84885 0.78601 0.76225 0.78095 1.17990 1.19899 1.19906 1.23245 0.95387 0.91936 1.58883 0.89841 1.85601 1.10495 0.99265 1.97057 1.23356 1.03622 0.94053 1.06889 1.20098 0.86211 0.86602 0.74813 1.90678 1.17457 1.86019 1.50269 1.45048 1.09878 1.03833 1.74542 1.21552 0.97377 0.78434 1.06661 0.87268 1.23419 1.03031 1.00570 0.91169 1.23045 0.98961 0.98443 0.95821 1.22481 0.94580 0.97936 0.98946 1.22706 0.95248 0.96091 1.02300 1.22569 0.97735 0.96077 0.97702 0.91962 0.87069 0.87139 0.74781 0.86851 0.87089 0.90201 0.90056 0.90441 0.88995 0.90218 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 8 H 0.08 4.45 7.80 -2.92 -0.02 4.42 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.13 -5.15 6.16 71.23 0.44 -4.71 16 11 C 0.54 20.49 7.85 87.65 0.69 21.18 16 12 O -0.57 -27.13 15.43 -3.02 -0.05 -27.18 16 13 N -0.68 -18.39 5.55 -443.19 -2.46 -20.85 16 14 C 0.07 1.62 6.43 44.85 0.29 1.91 16 15 H 0.11 3.31 7.40 -2.39 -0.02 3.30 16 16 C -0.14 -2.51 10.46 30.46 0.32 -2.19 16 17 C -0.16 -2.84 3.03 -52.30 -0.16 -2.99 16 18 C -0.10 -1.46 8.07 30.98 0.25 -1.21 16 19 C -0.13 -1.52 8.08 31.19 0.25 -1.27 16 20 C -0.10 -1.57 8.10 31.04 0.25 -1.32 16 21 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 22 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 23 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 24 H 0.42 8.38 8.83 -92.71 -0.82 7.57 16 25 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 0.82 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.43 292.58 2.38 -72.04 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.30 Total: 16.10 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 3.44 Total: -20.13 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.17 Total: -76.86 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -74.43 2.38 -72.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874788684.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.106 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds