Wall clock time and date at job start Thu Apr 9 2020 12:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46996 * 2 1 4 4 C 1.36930 * 120.00452 * 89.57810 * 3 2 1 5 5 H 1.08004 * 119.99757 * 34.09361 * 4 3 2 6 6 C 1.38810 * 120.00507 * 213.82433 * 4 3 2 7 7 N 1.31620 * 119.99919 * 23.09865 * 6 4 3 8 8 Si 1.86800 * 120.00176 * 203.10643 * 6 4 3 9 9 H 1.48492 * 109.47219 * 59.99281 * 8 6 4 10 10 H 1.48501 * 109.47244 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46713 * 299.99232 * 8 6 4 12 12 C 1.46502 * 119.99504 * 269.58174 * 3 2 1 13 13 C 1.50700 * 109.46794 * 269.99652 * 12 3 2 14 14 C 1.38641 * 120.06058 * 95.00652 * 13 12 3 15 15 C 1.38829 * 117.98283 * 180.02562 * 14 13 12 16 16 C 1.38771 * 117.95342 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 120.08838 * 179.97438 * 16 15 14 18 18 N 1.32030 * 119.81583 * 0.02562 * 16 15 14 19 19 N 1.28342 * 122.16417 * 359.70525 * 18 16 15 20 20 H 1.09005 * 109.47114 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47338 * 300.00437 * 1 2 3 22 22 H 1.09004 * 109.47156 * 60.00418 * 1 2 3 23 23 H 1.08996 * 109.46984 * 239.99664 * 2 1 3 24 24 H 1.09002 * 109.46711 * 119.99314 * 2 1 3 25 25 H 0.96998 * 120.00414 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47770 * 29.99932 * 12 3 2 27 27 H 1.09005 * 109.46579 * 150.00174 * 12 3 2 28 28 H 1.08003 * 121.01278 * 359.97373 * 14 13 12 29 29 H 1.08001 * 121.01982 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2383 2.0297 1.1858 5 1 2.5931 1.4792 2.0446 6 6 2.0107 3.3956 1.2826 7 7 1.1860 3.9864 0.4440 8 14 2.8750 4.3953 2.6029 9 1 4.3449 4.2884 2.4219 10 1 2.4654 5.8185 2.4938 11 1 2.5018 3.8737 3.9423 12 6 2.2712 2.0687 -1.2688 13 6 3.6974 1.8308 -1.6933 14 6 3.9980 0.8017 -2.5723 15 6 5.3260 0.6209 -2.9341 16 6 6.2704 1.4823 -2.3937 17 17 7.9471 1.3059 -2.8078 18 7 5.8904 2.4355 -1.5630 19 7 4.6616 2.6046 -1.2333 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 1.0272 4.9409 0.5114 26 1 1.5957 1.6827 -2.0322 27 1 2.1033 3.1382 -1.1422 28 1 3.2226 0.1594 -2.9631 29 1 5.6152 -0.1653 -3.6158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876631643.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:21 Heat of formation + Delta-G solvation = 69.222406 kcal Electronic energy + Delta-G solvation = -15124.016876 eV Core-core repulsion = 12495.414391 eV Total energy + Delta-G solvation = -2628.602485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49899 -36.70260 -36.12077 -32.90022 -32.12100 -31.89681 -28.96727 -26.48214 -24.23318 -23.88595 -22.44224 -20.27064 -17.25885 -17.07679 -16.77291 -15.17429 -14.88534 -14.58247 -13.97584 -13.79601 -13.45207 -12.90474 -12.45721 -12.06066 -11.83208 -11.38068 -11.24257 -11.21170 -10.77435 -10.58602 -10.52427 -10.22324 -10.09531 -9.91029 -9.89518 -9.11527 -9.00781 -8.55295 -6.81543 -5.90561 -3.40866 1.14903 1.22283 1.90318 3.41702 3.47969 3.57352 3.91743 4.48782 4.64151 4.89130 4.93993 5.13031 5.31928 5.43155 5.52160 5.93721 5.97631 6.08742 6.27669 6.35259 6.50276 6.61244 6.65445 6.84626 7.13689 7.46430 7.74298 8.36755 9.02392 9.20518 9.68192 10.19103 11.11185 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.008286 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.163491 B = 3378.360897 C = 4238.568917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.568 5.568 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.025 3.975 7 N -0.878 5.878 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.179 3.821 13 C 0.077 3.923 14 C -0.110 4.110 15 C -0.116 4.116 16 C 0.085 3.915 17 Cl -0.036 7.036 18 N -0.235 5.235 19 N -0.200 5.200 20 H 0.033 0.967 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.259 0.741 26 H 0.051 0.949 27 H 0.124 0.876 28 H 0.149 0.851 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -7.467 -7.883 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 N -0.287 5.287 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.177 4.177 7 N -0.519 5.519 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.209 1.209 12 C 0.051 3.949 13 C -0.070 4.070 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.088 4.088 17 Cl -0.009 7.009 18 N -0.079 5.079 19 N -0.044 5.044 20 H 0.052 0.948 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.119 -6.035 -6.929 10.518 hybrid contribution 0.356 -0.817 -0.345 0.955 sum 5.474 -6.851 -7.273 11.393 Atomic orbital electron populations 1.22243 0.98968 0.98647 1.02246 1.20932 0.92479 0.86690 0.98382 1.43806 1.72532 1.10466 1.01851 1.18975 1.38843 0.91504 0.89492 0.91994 1.25005 0.96413 0.98181 0.98089 1.69900 1.32407 1.10729 1.38852 0.86432 0.80811 0.78992 0.81019 1.20102 1.21449 1.20905 1.20135 0.83146 1.04456 0.87167 1.24860 1.02121 0.90591 0.89451 1.22420 0.96059 0.98284 0.97261 1.22043 0.92789 0.99343 1.00342 1.23333 0.87877 0.97694 0.99852 1.98366 1.14249 1.96596 1.91646 1.73012 1.11797 1.15014 1.08054 1.73310 0.93040 1.21684 1.16386 0.94817 0.92357 0.93590 0.94885 0.93739 0.93100 0.93078 0.85894 0.83338 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.24 37.16 0.38 -2.57 15 2 C 0.14 2.75 6.39 -4.04 -0.03 2.72 15 3 N -0.57 -13.31 2.44 -174.61 -0.43 -13.73 15 4 C -0.26 -6.87 9.49 -15.06 -0.14 -7.01 15 5 H 0.06 1.67 7.93 -52.48 -0.42 1.26 15 6 C 0.02 0.67 4.95 -17.43 -0.09 0.58 15 7 N -0.88 -24.21 11.31 55.49 0.63 -23.59 15 8 Si 0.90 22.03 29.61 -169.99 -5.03 16.99 15 9 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 15 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 12 C 0.18 3.95 5.63 -5.19 -0.03 3.92 15 13 C 0.08 1.57 6.45 -82.41 -0.53 1.03 15 14 C -0.11 -1.73 9.85 -39.21 -0.39 -2.12 15 15 C -0.12 -1.68 10.00 -39.17 -0.39 -2.07 15 16 C 0.08 1.45 7.37 -17.27 -0.13 1.32 15 17 Cl -0.04 -0.51 29.14 -51.86 -1.51 -2.03 15 18 N -0.23 -4.96 11.49 32.89 0.38 -4.58 15 19 N -0.20 -4.60 11.43 33.60 0.38 -4.21 15 20 H 0.03 0.51 8.14 -51.93 -0.42 0.08 15 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.03 0.56 8.07 -51.93 -0.42 0.14 15 24 H 0.04 0.87 8.04 -51.93 -0.42 0.45 15 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 26 H 0.05 0.99 7.98 -51.93 -0.41 0.57 15 27 H 0.12 3.15 5.31 -51.93 -0.28 2.88 15 28 H 0.15 1.84 8.06 -52.48 -0.42 1.42 15 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 15 LS Contribution 273.28 15.07 4.12 4.12 Total: -1.00 -29.10 273.28 -5.99 -35.09 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -3.19 Total: -3.87 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.34 Total: -4.19 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.96 Total: -46.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 16.99 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.10 -5.99 -35.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876631643.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.313 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds