Wall clock time and date at job start Thu Apr 9 2020 12:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46996 * 2 1 4 4 C 1.36930 * 120.00452 * 89.57810 * 3 2 1 5 5 H 1.08004 * 119.99757 * 34.09361 * 4 3 2 6 6 C 1.38810 * 120.00507 * 213.82433 * 4 3 2 7 7 N 1.31620 * 119.99919 * 23.09865 * 6 4 3 8 8 Si 1.86800 * 120.00176 * 203.10643 * 6 4 3 9 9 H 1.48492 * 109.47219 * 59.99281 * 8 6 4 10 10 H 1.48501 * 109.47244 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46713 * 299.99232 * 8 6 4 12 12 C 1.46502 * 119.99504 * 269.58174 * 3 2 1 13 13 C 1.50700 * 109.46794 * 269.99652 * 12 3 2 14 14 C 1.38641 * 120.06058 * 95.00652 * 13 12 3 15 15 C 1.38829 * 117.98283 * 180.02562 * 14 13 12 16 16 C 1.38771 * 117.95342 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 120.08838 * 179.97438 * 16 15 14 18 18 N 1.32030 * 119.81583 * 0.02562 * 16 15 14 19 19 N 1.28342 * 122.16417 * 359.70525 * 18 16 15 20 20 H 1.09005 * 109.47114 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47338 * 300.00437 * 1 2 3 22 22 H 1.09004 * 109.47156 * 60.00418 * 1 2 3 23 23 H 1.08996 * 109.46984 * 239.99664 * 2 1 3 24 24 H 1.09002 * 109.46711 * 119.99314 * 2 1 3 25 25 H 0.96998 * 120.00414 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47770 * 29.99932 * 12 3 2 27 27 H 1.09005 * 109.46579 * 150.00174 * 12 3 2 28 28 H 1.08003 * 121.01278 * 359.97373 * 14 13 12 29 29 H 1.08001 * 121.01982 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2383 2.0297 1.1858 5 1 2.5931 1.4792 2.0446 6 6 2.0107 3.3956 1.2826 7 7 1.1860 3.9864 0.4440 8 14 2.8750 4.3953 2.6029 9 1 4.3449 4.2884 2.4219 10 1 2.4654 5.8185 2.4938 11 1 2.5018 3.8737 3.9423 12 6 2.2712 2.0687 -1.2688 13 6 3.6974 1.8308 -1.6933 14 6 3.9980 0.8017 -2.5723 15 6 5.3260 0.6209 -2.9341 16 6 6.2704 1.4823 -2.3937 17 17 7.9471 1.3059 -2.8078 18 7 5.8904 2.4355 -1.5630 19 7 4.6616 2.6046 -1.2333 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 1.0272 4.9409 0.5114 26 1 1.5957 1.6827 -2.0322 27 1 2.1033 3.1382 -1.1422 28 1 3.2226 0.1594 -2.9631 29 1 5.6152 -0.1653 -3.6158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876631643.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:20 Heat of formation + Delta-G solvation = 51.043537 kcal Electronic energy + Delta-G solvation = -15124.805171 eV Core-core repulsion = 12495.414391 eV Total energy + Delta-G solvation = -2629.390780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.93492 -38.08808 -37.67767 -34.32189 -33.73787 -33.56057 -30.59853 -28.19860 -25.65869 -25.57430 -23.91286 -21.93388 -18.89279 -18.65489 -18.12635 -16.82528 -16.43268 -16.24082 -15.66295 -15.47613 -14.74606 -14.40401 -13.98957 -13.58605 -13.29420 -13.02602 -12.91076 -12.61483 -12.53052 -12.33010 -12.22395 -11.95325 -11.85395 -11.51289 -11.19620 -10.61074 -10.50210 -10.40193 -8.68236 -7.88005 -5.41483 -0.14686 -0.13270 0.61437 1.41937 1.48823 1.55969 2.44272 2.56281 3.19046 3.33217 3.61688 3.74925 3.81827 3.89195 4.18351 4.47114 4.64699 4.68248 4.86955 4.89311 5.07871 5.15016 5.21554 5.33893 5.59311 5.63594 5.78022 6.43660 7.12616 7.74898 7.83385 8.28366 9.09614 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.008286 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.163491 B = 3378.360897 C = 4238.568917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 N -0.585 5.585 4 C -0.262 4.262 5 H 0.048 0.952 6 C -0.013 4.013 7 N -0.902 5.902 8 Si 0.937 3.063 9 H -0.293 1.293 10 H -0.289 1.289 11 H -0.274 1.274 12 C 0.183 3.817 13 C 0.063 3.937 14 C -0.095 4.095 15 C -0.096 4.096 16 C 0.084 3.916 17 Cl -0.009 7.009 18 N -0.278 5.278 19 N -0.254 5.254 20 H 0.069 0.931 21 H 0.024 0.976 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.253 0.747 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.193 0.807 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.308 -10.045 -9.873 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 N -0.305 5.305 4 C -0.392 4.392 5 H 0.066 0.934 6 C -0.212 4.212 7 N -0.545 5.545 8 Si 0.766 3.234 9 H -0.220 1.220 10 H -0.215 1.215 11 H -0.200 1.200 12 C 0.055 3.945 13 C -0.086 4.086 14 C -0.125 4.125 15 C -0.125 4.125 16 C -0.089 4.089 17 Cl 0.019 6.981 18 N -0.121 5.121 19 N -0.096 5.096 20 H 0.088 0.912 21 H 0.043 0.957 22 H 0.061 0.939 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.210 0.790 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.801 -8.616 -8.915 13.688 hybrid contribution 0.332 -0.146 0.104 0.378 sum 6.133 -8.762 -8.810 13.857 Atomic orbital electron populations 1.22116 0.98128 1.00380 1.00414 1.21105 0.93092 0.84882 0.99764 1.43944 1.73692 1.11601 1.01227 1.19006 1.37899 0.91696 0.90610 0.93412 1.25393 0.97332 0.98976 0.99502 1.69984 1.33997 1.10242 1.40260 0.85821 0.78896 0.78300 0.80343 1.22020 1.21462 1.19965 1.19913 0.84984 1.02253 0.87358 1.24661 1.00575 0.92084 0.91243 1.22782 0.97855 0.96693 0.95128 1.22581 0.91435 0.99038 0.99423 1.23780 0.89784 0.96884 0.98446 1.98379 1.12247 1.96346 1.91161 1.72873 1.11331 1.17429 1.10433 1.73168 0.94200 1.23955 1.18324 0.91211 0.95656 0.93892 0.91358 0.94340 0.93780 0.90412 0.89869 0.78951 0.78325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 10.24 71.98 0.74 -4.49 15 2 C 0.14 5.03 6.39 86.38 0.55 5.58 15 3 N -0.58 -27.19 2.44 -706.33 -1.72 -28.91 15 4 C -0.26 -14.20 9.49 84.03 0.80 -13.40 15 5 H 0.05 2.66 7.93 -2.91 -0.02 2.64 15 6 C -0.01 -0.74 4.95 84.86 0.42 -0.32 15 7 N -0.90 -51.49 11.31 21.65 0.24 -51.24 15 8 Si 0.94 46.79 29.61 68.60 2.03 48.82 15 9 H -0.29 -15.31 7.11 99.48 0.71 -14.61 15 10 H -0.29 -14.25 7.11 99.48 0.71 -13.54 15 11 H -0.27 -13.09 7.11 99.48 0.71 -12.38 15 12 C 0.18 7.97 5.63 85.63 0.48 8.45 15 13 C 0.06 2.47 6.45 42.64 0.27 2.74 15 14 C -0.09 -2.59 9.85 22.51 0.22 -2.37 15 15 C -0.10 -2.33 10.00 22.54 0.23 -2.10 15 16 C 0.08 2.67 7.37 84.79 0.62 3.29 15 17 Cl -0.01 -0.23 29.14 -2.72 -0.08 -0.31 15 18 N -0.28 -11.62 11.49 -49.87 -0.57 -12.19 15 19 N -0.25 -11.76 11.43 -47.62 -0.54 -12.30 15 20 H 0.07 1.88 8.14 -2.38 -0.02 1.87 15 21 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.04 1.49 8.14 -2.38 -0.02 1.47 15 23 H 0.07 2.02 8.07 -2.39 -0.02 2.00 15 24 H 0.04 1.45 8.04 -2.39 -0.02 1.43 15 25 H 0.25 14.17 8.31 -92.71 -0.77 13.40 15 26 H 0.08 2.86 7.98 -2.39 -0.02 2.84 15 27 H 0.08 4.39 5.31 -2.38 -0.01 4.38 15 28 H 0.19 3.51 8.06 -2.91 -0.02 3.48 15 29 H 0.20 2.77 8.06 -2.91 -0.02 2.74 15 Total: -1.00 -66.89 273.28 4.85 -62.05 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: 1.15 Total: -3.29 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.33 Total: -2.61 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -2.59 Total: -104.65 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -66.89 4.85 -62.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876631643.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.093 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds