Wall clock time and date at job start Thu Apr 9 2020 12:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31511 * 119.99819 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47253 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47327 * 120.00148 * 8 6 4 11 11 H 1.48504 * 109.46695 * 239.99669 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 2 15 15 C 1.38643 * 120.05976 * 94.72598 * 14 13 12 16 16 C 1.38825 * 117.97759 * 179.78712 * 15 14 13 17 17 C 1.38762 * 117.95632 * 0.47871 * 16 15 14 18 18 Cl 1.73602 * 120.08911 * 179.77769 * 17 16 15 19 19 N 1.32021 * 119.82191 * 359.75067 * 17 16 15 20 20 N 1.28352 * 122.16231 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 23 23 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 24 24 H 0.97005 * 119.99939 * 180.02562 * 7 6 4 25 25 H 1.00899 * 111.00672 * 321.05145 * 12 2 1 26 26 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 27 27 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 28 28 H 1.07998 * 121.00900 * 0.02562 * 15 14 13 29 29 H 1.08002 * 121.01861 * 180.25934 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1472 -2.2863 3.6039 10 1 3.1470 -0.1858 4.8162 11 1 1.1675 -1.5865 4.8165 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5886 -0.5217 -3.5557 15 6 1.6915 -1.0712 -4.4587 16 6 2.2049 -1.7437 -5.5593 17 6 3.5843 -1.8328 -5.6820 18 17 4.2858 -2.6663 -7.0336 19 7 4.3616 -1.2817 -4.7683 20 7 3.8857 -0.6563 -3.7534 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7085 1.1613 3.4844 25 1 1.4496 -1.4980 -1.4100 26 1 1.0872 0.6162 -2.5526 27 1 2.7589 1.0461 -2.1182 28 1 0.6258 -0.9756 -4.3124 29 1 1.5508 -2.1870 -6.2956 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877320480.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:31 Heat of formation + Delta-G solvation = 50.451542 kcal Electronic energy + Delta-G solvation = -14429.500792 eV Core-core repulsion = 11800.084342 eV Total energy + Delta-G solvation = -2629.416450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11273 -37.10673 -36.32502 -33.66733 -33.07474 -31.76017 -28.69671 -25.62631 -25.08013 -24.78387 -22.41177 -20.31550 -17.88930 -17.39432 -16.64239 -15.50368 -15.40929 -14.71136 -14.28705 -13.87854 -13.57146 -13.31833 -12.61097 -12.32960 -11.81316 -11.73617 -11.67330 -11.17998 -10.93820 -10.82762 -10.57281 -10.42045 -10.21930 -9.99542 -9.70978 -9.55324 -9.07341 -8.40090 -7.40917 -6.02397 -4.05378 0.61238 0.64838 1.45826 3.31095 3.33909 3.39164 3.45399 4.01263 4.31580 4.40956 4.44110 4.58666 4.84841 5.28267 5.29977 5.41873 5.55365 5.80089 5.98404 6.14973 6.57897 6.73195 6.96853 7.21790 7.64783 7.82099 8.17055 8.37745 8.49920 8.56810 9.01897 9.60113 11.04784 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.047703 B = 0.004454 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.819841 B = 6284.731411 C = 6614.002741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.673 5.673 13 C 0.108 3.892 14 C 0.092 3.908 15 C -0.101 4.101 16 C -0.108 4.108 17 C 0.101 3.899 18 Cl -0.018 7.018 19 N -0.230 5.230 20 N -0.198 5.198 21 H 0.029 0.971 22 H 0.092 0.908 23 H 0.005 0.995 24 H 0.260 0.740 25 H 0.325 0.675 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 -3.849 -16.873 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.303 5.303 13 C -0.023 4.023 14 C -0.053 4.053 15 C -0.131 4.131 16 C -0.137 4.137 17 C -0.070 4.070 18 Cl 0.010 6.990 19 N -0.073 5.073 20 N -0.042 5.042 21 H 0.048 0.952 22 H 0.110 0.890 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.176 0.824 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.078 -3.410 -16.148 16.540 hybrid contribution -2.134 -0.758 -0.047 2.265 sum -1.056 -4.168 -16.196 16.757 Atomic orbital electron populations 1.22463 1.00496 0.99336 1.00713 1.19238 0.89663 0.94647 0.85917 0.94393 1.21166 1.30222 1.12551 0.89395 0.91785 1.24941 0.95286 0.95210 0.99088 1.69880 1.37320 1.23192 1.23360 0.86427 0.78500 0.79706 0.82705 1.19695 1.21064 1.21224 1.60860 1.58443 1.08596 1.02438 1.20839 0.99002 0.95429 0.87052 1.23284 0.90991 0.94484 0.96573 1.22446 1.02643 0.95072 0.92906 1.22171 0.93979 0.98457 0.99119 1.23498 0.91430 0.98509 0.93587 1.98407 1.85353 1.75106 1.40132 1.73038 1.32000 1.04555 0.97752 1.73224 1.13212 1.08715 1.09017 0.95219 0.88979 0.97553 0.93057 0.85818 0.93662 0.88922 0.82381 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 8.94 37.16 0.33 -3.51 15 2 C 0.21 5.11 2.57 -68.86 -0.18 4.94 15 3 H 0.04 1.00 7.80 -51.93 -0.40 0.60 15 4 C -0.49 -13.49 8.84 -34.43 -0.30 -13.79 15 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 15 7 N -0.90 -25.17 11.32 55.43 0.63 -24.54 15 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 15 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 15 12 N -0.67 -13.68 6.22 -109.21 -0.68 -14.36 15 13 C 0.11 1.80 5.82 -4.97 -0.03 1.77 15 14 C 0.09 1.39 6.38 -82.41 -0.53 0.86 15 15 C -0.10 -1.14 9.85 -39.21 -0.39 -1.52 15 16 C -0.11 -1.11 10.00 -39.17 -0.39 -1.51 15 17 C 0.10 1.30 7.37 -17.28 -0.13 1.18 15 18 Cl -0.02 -0.19 29.14 -51.86 -1.51 -1.70 15 19 N -0.23 -3.74 11.49 32.88 0.38 -3.36 15 20 N -0.20 -3.47 11.43 33.60 0.38 -3.09 15 21 H 0.03 0.63 8.13 -51.93 -0.42 0.21 15 22 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 23 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 15 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 25 H 0.33 6.16 8.46 -39.29 -0.33 5.83 15 26 H 0.05 0.67 7.35 -51.93 -0.38 0.29 15 27 H 0.09 1.64 8.06 -51.93 -0.42 1.22 15 28 H 0.16 1.30 8.06 -52.49 -0.42 0.88 15 29 H 0.16 1.04 8.06 -52.49 -0.42 0.62 15 LS Contribution 271.08 15.07 4.09 4.09 Total: -1.00 -29.67 271.08 -6.49 -36.16 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.05 Total: 0.59 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.70 Total: -10.17 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.71 Total: -45.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.67 -6.49 -36.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877320480.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.613 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds