Wall clock time and date at job start Thu Apr 9 2020 12:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31511 * 119.99819 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47253 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47327 * 120.00148 * 8 6 4 11 11 H 1.48504 * 109.46695 * 239.99669 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 2 15 15 C 1.38643 * 120.05976 * 94.72598 * 14 13 12 16 16 C 1.38825 * 117.97759 * 179.78712 * 15 14 13 17 17 C 1.38762 * 117.95632 * 0.47871 * 16 15 14 18 18 Cl 1.73602 * 120.08911 * 179.77769 * 17 16 15 19 19 N 1.32021 * 119.82191 * 359.75067 * 17 16 15 20 20 N 1.28352 * 122.16231 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 23 23 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 24 24 H 0.97005 * 119.99939 * 180.02562 * 7 6 4 25 25 H 1.00899 * 111.00672 * 321.05145 * 12 2 1 26 26 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 27 27 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 28 28 H 1.07998 * 121.00900 * 0.02562 * 15 14 13 29 29 H 1.08002 * 121.01861 * 180.25934 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1472 -2.2863 3.6039 10 1 3.1470 -0.1858 4.8162 11 1 1.1675 -1.5865 4.8165 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5886 -0.5217 -3.5557 15 6 1.6915 -1.0712 -4.4587 16 6 2.2049 -1.7437 -5.5593 17 6 3.5843 -1.8328 -5.6820 18 17 4.2858 -2.6663 -7.0336 19 7 4.3616 -1.2817 -4.7683 20 7 3.8857 -0.6563 -3.7534 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7085 1.1613 3.4844 25 1 1.4496 -1.4980 -1.4100 26 1 1.0872 0.6162 -2.5526 27 1 2.7589 1.0461 -2.1182 28 1 0.6258 -0.9756 -4.3124 29 1 1.5508 -2.1870 -6.2956 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877320480.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:30 Heat of formation + Delta-G solvation = 29.436342 kcal Electronic energy + Delta-G solvation = -14430.412080 eV Core-core repulsion = 11800.084342 eV Total energy + Delta-G solvation = -2630.327738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16047 -38.18274 -37.79037 -35.16456 -34.19175 -33.33531 -30.31778 -27.27174 -26.80637 -25.77699 -23.62308 -22.16734 -18.99832 -18.49842 -18.25717 -17.00161 -16.67888 -16.36326 -15.63702 -15.14704 -14.87890 -14.66705 -14.15286 -13.64998 -13.41684 -13.11433 -12.89020 -12.77586 -12.57626 -12.50366 -12.18827 -12.12108 -11.83059 -11.34636 -11.04748 -10.72960 -10.65455 -10.47703 -9.01532 -8.09705 -6.19712 -0.35813 -0.31142 0.51810 1.41550 1.44409 1.56060 2.28064 2.45666 2.94689 3.19149 3.33997 3.54898 3.67539 3.84578 3.91897 4.43254 4.48025 4.66026 4.79334 4.88919 4.96740 5.02683 5.09622 5.42977 5.71793 5.83259 6.27817 6.59908 6.77468 6.93783 7.49860 7.50532 8.95605 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.047703 B = 0.004454 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.819841 B = 6284.731411 C = 6614.002741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.515 4.515 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.685 5.685 13 C 0.114 3.886 14 C 0.077 3.923 15 C -0.088 4.088 16 C -0.090 4.090 17 C 0.095 3.905 18 Cl 0.000 7.000 19 N -0.268 5.268 20 N -0.245 5.245 21 H 0.035 0.965 22 H 0.061 0.939 23 H 0.037 0.963 24 H 0.261 0.739 25 H 0.335 0.665 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -4.930 -18.363 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.110 3.890 3 H 0.025 0.975 4 C -0.554 4.554 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.316 5.316 13 C -0.017 4.017 14 C -0.069 4.069 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.077 4.077 18 Cl 0.028 6.972 19 N -0.111 5.111 20 N -0.087 5.087 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.215 0.785 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.273 -4.495 -17.655 18.221 hybrid contribution -1.688 -0.453 0.277 1.769 sum -1.961 -4.949 -17.379 18.176 Atomic orbital electron populations 1.22241 0.99062 0.99642 1.00726 1.18955 0.90612 0.92770 0.86651 0.97499 1.21463 1.30302 1.12411 0.91234 0.93256 1.25638 0.95520 0.95906 1.01657 1.69990 1.37944 1.24064 1.23943 0.85527 0.78104 0.78555 0.79532 1.19782 1.20883 1.20329 1.60595 1.58665 1.09446 1.02866 1.20727 0.99959 0.94439 0.86538 1.23111 0.91199 0.95629 0.96997 1.22794 1.03828 0.93349 0.91701 1.22656 0.93151 0.96860 0.99238 1.23854 0.92724 0.97779 0.93320 1.98414 1.85419 1.74529 1.38855 1.72898 1.33352 1.06165 0.98699 1.73083 1.14882 1.10363 1.10390 0.94626 0.91997 0.94399 0.92955 0.84755 0.90957 0.91117 0.78548 0.77974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.93 8.94 71.98 0.64 -6.29 15 2 C 0.22 10.59 2.57 44.17 0.11 10.70 15 3 H 0.01 0.38 7.80 -2.39 -0.02 0.36 15 4 C -0.52 -28.49 8.84 25.60 0.23 -28.27 15 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 15 6 C 0.01 0.61 5.30 84.66 0.45 1.06 15 7 N -0.92 -52.03 11.32 21.45 0.24 -51.79 15 8 Si 0.96 44.17 29.54 68.60 2.03 46.19 15 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 15 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 12 N -0.68 -27.64 6.22 -499.45 -3.11 -30.75 15 13 C 0.11 3.72 5.82 85.56 0.50 4.22 15 14 C 0.08 2.22 6.38 42.65 0.27 2.50 15 15 C -0.09 -1.66 9.85 22.51 0.22 -1.44 15 16 C -0.09 -1.51 10.00 22.54 0.23 -1.29 15 17 C 0.10 2.27 7.37 84.79 0.62 2.90 15 18 Cl 0.00 0.00 29.14 -2.72 -0.08 -0.08 15 19 N -0.27 -8.67 11.49 -49.88 -0.57 -9.24 15 20 N -0.24 -8.62 11.43 -47.62 -0.54 -9.16 15 21 H 0.03 1.48 8.13 -2.39 -0.02 1.46 15 22 H 0.06 3.13 6.07 -2.39 -0.01 3.12 15 23 H 0.04 1.38 7.45 -2.39 -0.02 1.37 15 24 H 0.26 14.07 8.31 -92.70 -0.77 13.30 15 25 H 0.33 12.26 8.46 -89.69 -0.76 11.50 15 26 H 0.07 1.95 7.35 -2.39 -0.02 1.94 15 27 H 0.07 2.58 8.06 -2.38 -0.02 2.56 15 28 H 0.20 2.16 8.06 -2.91 -0.02 2.13 15 29 H 0.20 1.51 8.06 -2.91 -0.02 1.48 15 Total: -1.00 -66.08 271.08 1.65 -64.42 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.41 Total: 6.32 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 3.27 Total: -15.91 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -3.98 Total: -100.93 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -66.08 1.65 -64.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877320480.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.858 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds