Wall clock time and date at job start Thu Apr 9 2020 12:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31875 * 118.93855 * 2 1 4 4 C 1.32133 * 120.97001 * 179.97438 * 3 2 1 5 5 C 1.40033 * 118.91566 * 359.97438 * 4 3 2 6 6 C 1.47870 * 120.94739 * 179.97438 * 5 4 3 7 7 C 1.39297 * 120.78157 * 310.00418 * 6 5 4 8 8 N 1.31673 * 120.66218 * 180.02562 * 7 6 5 9 9 C 1.32208 * 122.50358 * 359.97087 * 8 7 6 10 10 C 1.36489 * 121.50382 * 0.02562 * 9 8 7 11 11 C 1.41118 * 119.10499 * 359.76474 * 10 9 8 12 12 C 1.40939 * 121.10756 * 180.23384 * 11 10 9 13 13 H 1.08004 * 120.00159 * 150.50337 * 12 11 10 14 14 C 1.40189 * 120.00200 * 330.51121 * 12 11 10 15 15 N 1.30674 * 120.00083 * 162.07627 * 14 12 11 16 16 Si 1.86797 * 119.99704 * 342.07501 * 14 12 11 17 17 H 1.48503 * 109.47195 * 95.35851 * 16 14 12 18 18 H 1.48497 * 109.47101 * 215.35552 * 16 14 12 19 19 H 1.48506 * 109.47155 * 335.35560 * 16 14 12 20 20 C 1.40025 * 118.10446 * 0.02562 * 5 4 3 21 21 N 1.31871 * 118.93815 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47321 * 270.00180 * 1 2 3 23 23 H 1.09002 * 109.46941 * 30.00056 * 1 2 3 24 24 H 1.09000 * 109.46826 * 149.99740 * 1 2 3 25 25 H 1.08008 * 120.54115 * 180.27221 * 4 3 2 26 26 H 1.07998 * 119.67011 * 359.97207 * 7 6 5 27 27 H 1.08003 * 119.24825 * 180.02562 * 9 8 7 28 28 H 1.08006 * 120.44928 * 180.02562 * 10 9 8 29 29 H 0.97005 * 119.99933 * 179.97438 * 15 14 12 30 30 H 1.08005 * 120.54571 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1452 1.1541 0.0000 4 6 3.4657 1.2009 0.0005 5 6 4.1858 -0.0001 0.0016 6 6 5.6645 -0.0001 0.0016 7 6 6.3774 0.7684 -0.9157 8 7 7.6941 0.7663 -0.9139 9 6 8.4022 0.0493 -0.0580 10 6 7.8014 -0.7376 0.8815 11 6 6.3922 -0.7810 0.9412 12 6 5.7280 -1.5753 1.8974 13 1 4.7571 -1.2784 2.2657 14 6 6.3277 -2.7508 2.3707 15 7 5.9076 -3.2973 3.4808 16 14 7.7272 -3.5357 1.4144 17 1 9.0254 -3.0789 1.9725 18 1 7.6339 -5.0137 1.5241 19 1 7.6350 -3.1384 -0.0135 20 6 3.4657 -1.2010 0.0015 21 7 2.1451 -1.1541 0.0005 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 3.9812 2.1500 0.0049 26 1 5.8448 1.3714 -1.6362 27 1 9.4806 0.0873 -0.1033 28 1 8.3966 -1.3161 1.5727 29 1 6.3223 -4.1109 3.8081 30 1 3.9811 -2.1501 0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205870283.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:50 Heat of formation + Delta-G solvation = 45.670313 kcal Electronic energy + Delta-G solvation = -16308.051351 eV Core-core repulsion = 13680.860420 eV Total energy + Delta-G solvation = -2627.190931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91942 -40.31301 -36.12877 -34.95119 -34.62714 -33.12372 -31.69392 -28.94393 -27.66656 -25.50965 -24.38437 -23.48581 -22.23610 -19.74375 -18.45258 -17.92896 -17.52145 -16.80655 -16.43703 -16.12230 -15.90326 -15.06209 -14.61317 -14.52751 -14.39035 -14.12810 -13.50387 -13.44839 -13.15199 -12.99168 -12.78537 -12.58398 -12.12155 -11.73224 -11.68395 -11.28316 -10.76929 -10.27926 -10.09008 -9.86894 -9.33038 -9.06763 -6.75293 -0.21888 0.16810 0.71437 0.72591 1.24153 1.38949 1.45159 2.02998 2.56519 2.81618 3.14809 3.24994 3.43240 3.72958 3.82425 4.04241 4.22104 4.32468 4.47554 4.58537 4.66809 4.73539 4.75857 5.02951 5.06137 5.09485 5.20166 5.33558 5.54557 5.64882 5.97677 6.05609 6.17908 6.46172 6.58194 7.17271 7.50714 7.98786 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.009354 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.329757 B = 2992.786214 C = 3948.173669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.274 3.726 3 N -0.526 5.526 4 C 0.140 3.860 5 C -0.103 4.103 6 C -0.221 4.221 7 C 0.144 3.856 8 N -0.579 5.579 9 C 0.118 3.882 10 C -0.292 4.292 11 C 0.110 3.890 12 C -0.448 4.448 13 H 0.060 0.940 14 C 0.056 3.944 15 N -0.819 5.819 16 Si 0.963 3.037 17 H -0.250 1.250 18 H -0.275 1.275 19 H -0.254 1.254 20 C 0.156 3.844 21 N -0.535 5.535 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.186 0.814 26 H 0.158 0.842 27 H 0.160 0.840 28 H 0.114 0.886 29 H 0.301 0.699 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 2.637 -5.231 6.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.240 5.240 4 C -0.026 4.026 5 C -0.108 4.108 6 C -0.227 4.227 7 C -0.012 4.012 8 N -0.293 5.293 9 C -0.032 4.032 10 C -0.314 4.314 11 C 0.102 3.898 12 C -0.478 4.478 13 H 0.079 0.921 14 C -0.164 4.164 15 N -0.443 5.443 16 Si 0.785 3.215 17 H -0.175 1.175 18 H -0.201 1.201 19 H -0.178 1.178 20 C -0.009 4.009 21 N -0.250 5.250 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.110 0.890 25 H 0.203 0.797 26 H 0.176 0.824 27 H 0.177 0.823 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.173 2.961 -5.601 7.086 hybrid contribution 1.062 -1.178 0.966 1.857 sum -2.112 1.782 -4.635 5.396 Atomic orbital electron populations 1.20602 0.83287 1.04916 1.04465 1.23978 0.99798 0.83367 0.92097 1.68208 1.10116 1.30337 1.15297 1.23712 0.89201 0.98407 0.91288 1.20309 0.94624 0.95185 1.00665 1.19375 0.90700 1.10102 1.02515 1.22651 0.89960 0.93727 0.94885 1.67544 1.08036 1.26148 1.27599 1.22217 1.00195 0.90999 0.89801 1.21782 0.94822 1.08815 1.05945 1.18005 0.92023 0.90217 0.89527 1.19318 1.04378 1.06047 1.18059 0.92144 1.26904 0.98783 0.96887 0.93859 1.69630 1.38940 1.18514 1.17220 0.85513 0.78378 0.76858 0.80710 1.17473 1.20110 1.17822 1.23404 0.88996 0.98916 0.89630 1.68216 1.10177 1.31081 1.15503 0.89085 0.88323 0.88986 0.79696 0.82444 0.82291 0.86849 0.88800 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.79 10.31 71.24 0.73 -1.05 16 2 C 0.27 9.47 7.64 138.70 1.06 10.53 16 3 N -0.53 -18.39 10.31 -186.72 -1.93 -20.32 16 4 C 0.14 4.93 10.89 85.08 0.93 5.86 16 5 C -0.10 -4.11 5.01 -19.86 -0.10 -4.21 16 6 C -0.22 -9.33 5.58 -19.49 -0.11 -9.44 16 7 C 0.14 5.55 10.74 84.97 0.91 6.46 16 8 N -0.58 -23.24 10.32 -196.20 -2.02 -25.26 16 9 C 0.12 4.62 11.09 84.23 0.93 5.56 16 10 C -0.29 -12.60 7.21 22.57 0.16 -12.44 16 11 C 0.11 5.14 5.13 -20.93 -0.11 5.03 16 12 C -0.45 -22.69 7.77 23.41 0.18 -22.51 16 13 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 14 C 0.06 2.69 5.43 85.34 0.46 3.15 16 15 N -0.82 -41.06 13.92 21.87 0.30 -40.76 16 16 Si 0.96 38.63 24.53 68.60 1.68 40.32 16 17 H -0.25 -9.34 6.71 99.48 0.67 -8.67 16 18 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.25 -10.58 6.84 99.48 0.68 -9.90 16 20 C 0.16 6.49 9.51 85.08 0.81 7.29 16 21 N -0.54 -20.93 10.31 -186.73 -1.93 -22.86 16 22 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.19 5.44 8.06 -2.91 -0.02 5.42 16 26 H 0.16 5.04 8.06 -2.91 -0.02 5.02 16 27 H 0.16 5.08 8.06 -2.91 -0.02 5.06 16 28 H 0.11 4.76 4.78 -2.91 -0.01 4.74 16 29 H 0.30 13.45 8.29 -92.70 -0.77 12.68 16 30 H 0.16 6.71 7.46 -2.91 -0.02 6.69 16 Total: -1.00 -57.17 262.63 3.08 -54.09 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 1.10 Total: 20.56 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.87 Total: -5.77 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -5.57 Total: -109.19 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.68 Total: 40.32 kcal Total: -57.17 3.08 -54.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205870283.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.758 kcal (2) G-P(sol) polarization free energy of solvation -57.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds