Wall clock time and date at job start Thu Apr 9 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48500 * 109.46875 * 85.10597 * 3 2 1 5 5 H 1.48495 * 109.46913 * 205.10865 * 3 2 1 6 6 H 1.48501 * 109.47195 * 325.10848 * 3 2 1 7 7 C 1.40030 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99506 * 187.22629 * 7 2 1 9 9 C 1.41428 * 119.99885 * 7.21877 * 7 2 1 10 10 C 1.40448 * 119.77562 * 186.92438 * 9 7 2 11 11 C 1.39389 * 118.82718 * 179.77828 * 10 9 7 12 12 C 1.48243 * 120.82623 * 180.26610 * 11 10 9 13 13 C 1.39545 * 120.57513 * 310.22934 * 12 11 10 14 14 C 1.38553 * 118.39603 * 180.02562 * 13 12 11 15 15 C 1.38199 * 119.45822 * 0.02562 * 14 13 12 16 16 N 1.31941 * 121.13081 * 0.02562 * 15 14 13 17 17 C 1.32346 * 121.75031 * 359.66032 * 16 15 14 18 18 N 1.38709 * 119.79335 * 180.33597 * 17 16 15 19 19 C 1.40106 * 118.34656 * 0.48903 * 11 10 9 20 20 C 1.38455 * 119.41465 * 359.75643 * 19 11 10 21 21 N 1.31498 * 121.15888 * 359.97438 * 20 19 11 22 22 H 0.96994 * 120.00275 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.58342 * 0.02562 * 10 9 7 24 24 H 1.08010 * 120.79766 * 0.02770 * 13 12 11 25 25 H 1.08002 * 120.27033 * 180.02562 * 14 13 12 26 26 H 1.07999 * 119.43600 * 179.97438 * 15 14 13 27 27 H 0.97000 * 120.00185 * 180.28596 * 18 17 16 28 28 H 0.96996 * 120.00424 * 0.29299 * 18 17 16 29 29 H 1.07992 * 120.28919 * 179.72461 * 19 11 10 30 30 H 1.08002 * 119.42110 * 179.97438 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3854 2.1061 1.3950 5 1 3.5867 1.4126 -0.5941 6 1 1.4943 2.6206 -0.8009 7 6 2.0076 -1.2127 -0.0005 8 1 3.0812 -1.2163 0.1171 9 6 1.3089 -2.4326 -0.1550 10 6 1.9922 -3.6510 -0.0096 11 6 1.2832 -4.8414 -0.1614 12 6 1.9588 -6.1524 -0.0116 13 6 3.1480 -6.4198 -0.6910 14 6 3.7408 -7.6602 -0.5186 15 6 3.1439 -8.5891 0.3125 16 7 2.0186 -8.3153 0.9445 17 6 1.4162 -7.1437 0.8182 18 7 0.2378 -6.8968 1.5071 19 6 -0.0829 -4.7682 -0.4637 20 6 -0.6844 -3.5282 -0.5966 21 7 0.0038 -2.4182 -0.4436 22 1 -0.4850 0.8400 0.0004 23 1 3.0475 -3.6652 0.2197 24 1 3.5955 -5.6776 -1.3356 25 1 4.6619 -7.8991 -1.0295 26 1 3.6061 -9.5560 0.4462 27 1 -0.2085 -6.0407 1.4136 28 1 -0.1400 -7.5802 2.0825 29 1 -0.6615 -5.6709 -0.5924 30 1 -1.7374 -3.4716 -0.8301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243473990.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:37 Heat of formation + Delta-G solvation = 63.733696 kcal Electronic energy + Delta-G solvation = -16019.473542 eV Core-core repulsion = 13393.065898 eV Total energy + Delta-G solvation = -2626.407643 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90743 -37.99786 -34.55563 -33.73802 -32.74533 -30.16012 -29.98730 -28.26511 -25.74244 -23.68126 -22.39717 -21.30295 -20.70603 -17.58242 -17.08578 -16.92309 -15.73699 -15.06048 -14.58980 -14.37631 -14.30271 -13.91534 -13.61897 -13.07681 -12.60204 -12.52027 -12.19591 -11.58219 -11.25042 -11.10142 -10.89407 -10.55852 -10.48718 -10.08315 -9.58314 -9.30901 -9.14478 -8.26226 -7.74445 -7.62680 -7.22837 -6.53313 -4.59426 1.48127 1.83016 2.67345 2.90468 3.05290 3.07983 3.13436 3.89272 3.92639 4.29400 4.66718 4.97709 5.25913 5.35876 5.53311 5.77439 5.83597 6.00504 6.04213 6.35074 6.42158 6.58102 6.69252 6.83884 6.93604 7.05265 7.24307 7.43624 7.59987 7.65969 7.81431 7.92552 8.15654 8.56318 8.59506 8.83232 10.02459 10.23416 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.038419 B = 0.005975 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.626081 B = 4684.974609 C = 5161.767994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.431 4.431 8 H 0.084 0.916 9 C 0.259 3.741 10 C -0.254 4.254 11 C 0.013 3.987 12 C -0.137 4.137 13 C -0.030 4.030 14 C -0.238 4.238 15 C 0.132 3.868 16 N -0.553 5.553 17 C 0.413 3.587 18 N -0.846 5.846 19 C -0.320 4.320 20 C 0.130 3.870 21 N -0.487 5.487 22 H 0.275 0.725 23 H 0.100 0.900 24 H 0.131 0.869 25 H 0.126 0.874 26 H 0.149 0.851 27 H 0.417 0.583 28 H 0.396 0.604 29 H 0.096 0.904 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -8.052 0.323 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.154 4.154 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.102 0.898 9 C 0.134 3.866 10 C -0.277 4.277 11 C 0.007 3.993 12 C -0.145 4.145 13 C -0.055 4.055 14 C -0.261 4.261 15 C -0.025 4.025 16 N -0.272 5.272 17 C 0.174 3.826 18 N -0.392 5.392 19 C -0.343 4.343 20 C -0.036 4.036 21 N -0.200 5.200 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.149 0.851 25 H 0.144 0.856 26 H 0.166 0.834 27 H 0.251 0.749 28 H 0.224 0.776 29 H 0.114 0.886 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.993 -7.674 0.773 7.966 hybrid contribution 0.863 0.503 -0.295 1.041 sum 2.856 -7.171 0.478 7.734 Atomic orbital electron populations 1.70059 1.07329 1.28117 1.28256 1.26053 0.94862 1.01149 0.93353 0.86319 0.80666 0.80826 0.79088 1.19464 1.18407 1.19958 1.19638 0.94893 0.89615 1.42074 0.89758 1.18532 0.88338 0.91640 0.88063 1.21832 0.99323 0.92411 1.14177 1.18369 0.93176 0.90104 0.97697 1.19310 0.97804 0.95226 1.02112 1.21457 0.92569 0.96028 0.95488 1.21668 1.03354 0.95659 1.05408 1.22252 0.90060 0.98573 0.91595 1.67114 1.12393 1.19700 1.27957 1.18329 0.87087 0.88430 0.88743 1.42489 1.24618 1.20792 1.51252 1.21284 0.94630 0.97903 1.20517 1.22421 0.98580 0.88587 0.94056 1.68659 1.07594 1.27263 1.16493 0.91410 0.88194 0.85065 0.85565 0.83414 0.74873 0.77609 0.88580 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.71 11.57 55.55 0.64 -18.07 16 2 C 0.07 1.79 5.47 -17.34 -0.09 1.69 16 3 Si 0.91 18.22 29.57 -169.99 -5.03 13.20 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.43 -11.31 9.13 -37.70 -0.34 -11.65 16 8 H 0.08 2.07 7.86 -52.49 -0.41 1.66 16 9 C 0.26 6.90 6.52 -85.02 -0.55 6.34 16 10 C -0.25 -6.10 9.38 -38.32 -0.36 -6.46 16 11 C 0.01 0.29 5.09 -104.66 -0.53 -0.24 16 12 C -0.14 -2.64 5.54 -104.56 -0.58 -3.22 16 13 C -0.03 -0.50 9.70 -38.98 -0.38 -0.88 16 14 C -0.24 -3.39 10.09 -39.48 -0.40 -3.78 16 15 C 0.13 1.91 11.16 -17.52 -0.20 1.71 16 16 N -0.55 -9.34 10.38 -12.21 -0.13 -9.46 16 17 C 0.41 7.42 7.70 -154.94 -1.19 6.22 16 18 N -0.85 -13.40 8.68 31.28 0.27 -13.13 16 19 C -0.32 -6.83 7.88 -38.80 -0.31 -7.14 16 20 C 0.13 3.01 11.16 -17.61 -0.20 2.82 16 21 N -0.49 -13.04 7.96 -11.22 -0.09 -13.13 16 22 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 23 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 24 H 0.13 2.11 8.06 -52.48 -0.42 1.68 16 25 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 26 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.42 6.89 5.99 -40.82 -0.24 6.65 16 28 H 0.40 5.24 8.95 -40.82 -0.37 4.88 16 29 H 0.10 1.86 7.58 -52.49 -0.40 1.46 16 30 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 267.27 15.07 4.03 4.03 Total: -1.00 -29.26 267.27 -8.10 -37.36 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -2.67 Total: 13.80 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -5.13 Total: -14.59 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.70 Total: -53.80 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.26 -8.10 -37.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243473990.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.092 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds