Wall clock time and date at job start Thu Apr 9 2020 12:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.52029 * 2 1 4 4 C 1.53038 * 109.49718 * 239.91506 * 2 1 3 5 5 C 1.53033 * 109.53469 * 178.68289 * 4 2 1 6 6 C 1.53193 * 109.31546 * 61.36966 * 5 4 2 7 7 N 1.46961 * 108.88543 * 305.44083 * 6 5 4 8 8 C 1.34779 * 120.65787 * 233.53702 * 7 6 5 9 9 O 1.21406 * 120.00220 * 171.19268 * 8 7 6 10 10 C 1.49023 * 119.99384 * 351.19643 * 8 7 6 11 11 O 1.21367 * 120.00062 * 353.20844 * 10 8 7 12 12 O 1.34502 * 119.99811 * 173.21667 * 10 8 7 13 13 C 1.34555 * 117.00100 * 179.97438 * 12 10 8 14 14 H 1.07998 * 119.99813 * 0.02562 * 13 12 10 15 15 C 1.39204 * 120.00411 * 179.97438 * 13 12 10 16 16 N 1.31161 * 120.00402 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99483 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47258 * 90.00213 * 17 15 13 19 19 H 1.48503 * 109.46722 * 209.99916 * 17 15 13 20 20 H 1.48496 * 109.47141 * 329.99709 * 17 15 13 21 21 C 1.46925 * 118.71690 * 53.35133 * 7 6 5 22 22 H 1.09004 * 109.47236 * 299.92252 * 1 2 3 23 23 H 1.09005 * 109.46763 * 59.92138 * 1 2 3 24 24 H 1.09002 * 109.47324 * 179.91813 * 1 2 3 25 25 H 1.08996 * 109.46361 * 298.70721 * 4 2 1 26 26 H 1.08997 * 109.46038 * 58.66643 * 4 2 1 27 27 H 1.09008 * 109.49875 * 181.31440 * 5 4 2 28 28 H 1.09003 * 109.50261 * 301.41157 * 5 4 2 29 29 H 1.09001 * 109.58958 * 65.14674 * 6 5 4 30 30 H 1.09000 * 109.58872 * 185.43532 * 6 5 4 31 31 H 0.97003 * 119.99952 * 180.02562 * 16 15 13 32 32 H 1.09003 * 109.59160 * 186.78224 * 21 7 6 33 33 H 1.09002 * 109.58389 * 66.50424 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 3.5708 -0.6950 -1.2659 6 6 4.1053 -1.4267 -0.0306 7 7 3.5045 -0.8320 1.1715 8 6 4.2805 -0.3910 2.1814 9 8 3.7883 0.2403 3.0941 10 6 5.7428 -0.6783 2.1774 11 8 6.2149 -1.4115 1.3333 12 8 6.5393 -0.1252 3.1094 13 6 7.8495 -0.4259 3.0498 14 1 8.2177 -1.0844 2.2771 15 6 8.7305 0.1126 3.9834 16 7 10.0075 -0.1809 3.9255 17 14 8.0936 1.2523 5.3195 18 1 7.7107 0.4529 6.5109 19 1 9.1566 2.2196 5.6931 20 1 6.9073 1.9904 4.8165 21 6 2.0413 -0.7237 1.2497 22 1 -0.3634 0.5126 0.8907 23 1 -0.3633 0.5151 -0.8893 24 1 -0.3634 -1.0277 -0.0015 25 1 1.6967 -1.7573 -1.2352 26 1 1.6582 -0.2246 -2.1388 27 1 3.9335 -1.1898 -2.1669 28 1 3.9159 0.3388 -1.2540 29 1 3.8375 -2.4818 -0.0865 30 1 5.1898 -1.3267 0.0125 31 1 10.6213 0.1941 4.5763 32 1 1.7637 -0.1578 2.1390 33 1 1.6033 -1.7206 1.2995 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787538766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:16 Heat of formation + Delta-G solvation = -105.673364 kcal Electronic energy + Delta-G solvation = -17701.663855 eV Core-core repulsion = 14728.308500 eV Total energy + Delta-G solvation = -2973.355356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37762 -38.82585 -37.31598 -35.81322 -33.45632 -32.55369 -31.78204 -27.37162 -26.44588 -25.40472 -22.85103 -22.22744 -20.31599 -19.25132 -18.18515 -17.05729 -16.44702 -15.71977 -15.43473 -15.13207 -14.44450 -14.32041 -14.07374 -13.81416 -13.38487 -12.91168 -12.71881 -12.60217 -12.35059 -12.17089 -11.79643 -11.39456 -11.11613 -11.00466 -10.88237 -10.61785 -10.49603 -10.43070 -10.12071 -9.87686 -8.86600 -8.60859 -8.48814 -6.59840 -4.29932 1.96550 2.75606 3.19572 3.23922 3.40781 3.80678 4.15348 4.22576 4.65045 4.72840 4.84025 4.96364 5.08559 5.32086 5.40425 5.44515 5.55565 5.63057 5.70518 5.77922 5.85962 5.92907 5.99934 6.05934 6.11531 6.30336 6.38145 6.67933 7.43418 7.53055 7.77935 8.17163 8.46072 8.76704 9.45533 10.45670 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043173 B = 0.006143 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.394457 B = 4556.742329 C = 5031.102837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.136 4.136 6 C 0.068 3.932 7 N -0.590 5.590 8 C 0.542 3.458 9 O -0.517 6.517 10 C 0.378 3.622 11 O -0.521 6.521 12 O -0.204 6.204 13 C -0.381 4.381 14 H 0.117 0.883 15 C 0.075 3.925 16 N -0.849 5.849 17 Si 0.903 3.097 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.252 1.252 21 C 0.116 3.884 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.147 0.853 31 H 0.286 0.714 32 H 0.092 0.908 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.221 -0.283 -8.140 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.174 4.174 6 C -0.054 4.054 7 N -0.325 5.325 8 C 0.327 3.673 9 O -0.393 6.393 10 C 0.224 3.776 11 O -0.421 6.421 12 O -0.108 6.108 13 C -0.456 4.456 14 H 0.134 0.866 15 C -0.133 4.133 16 N -0.486 5.486 17 Si 0.727 3.273 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.176 1.176 21 C -0.006 4.006 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.164 0.836 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.121 -0.080 -7.715 16.976 hybrid contribution -0.112 0.329 0.460 0.577 sum -15.233 0.249 -7.255 16.875 Atomic orbital electron populations 1.21759 0.94466 1.01939 1.01966 1.21510 0.95755 1.00356 0.95071 0.90650 1.21613 0.95889 1.00553 0.97197 1.21961 0.95412 1.01634 0.98384 1.22895 1.04331 0.96073 0.82060 1.47742 1.06085 1.60702 1.18014 1.19130 0.86167 0.79518 0.82472 1.90716 1.74833 1.37834 1.35926 1.22130 0.87825 0.84228 0.83439 1.90357 1.75623 1.38413 1.37660 1.83491 1.20961 1.59688 1.46661 1.20898 0.77398 1.30492 1.16858 0.86562 1.24664 0.94049 0.96918 0.97711 1.69468 1.02239 1.41358 1.35567 0.86223 0.79579 0.80516 0.81015 1.19326 1.20334 1.17579 1.21703 0.79001 1.00759 0.99153 0.92387 0.92402 0.92523 0.91846 0.91946 0.90650 0.91650 0.91835 0.83618 0.90347 0.88952 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 2 C -0.11 -1.17 2.87 -90.50 -0.26 -1.43 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.16 5.17 -26.69 -0.14 -1.29 16 5 C -0.14 -1.62 6.08 -26.61 -0.16 -1.78 16 6 C 0.07 1.02 5.97 -3.69 -0.02 1.00 16 7 N -0.59 -9.98 2.98 -173.41 -0.52 -10.49 16 8 C 0.54 11.60 7.72 -11.78 -0.09 11.51 16 9 O -0.52 -12.06 16.40 -7.83 -0.13 -12.19 16 10 C 0.38 9.33 7.80 35.21 0.27 9.60 16 11 O -0.52 -12.91 12.42 -19.17 -0.24 -13.15 16 12 O -0.20 -5.65 8.43 -25.22 -0.21 -5.86 16 13 C -0.38 -11.17 10.12 31.09 0.31 -10.86 16 14 H 0.12 3.63 7.08 -52.49 -0.37 3.26 16 15 C 0.07 2.10 5.50 -17.48 -0.10 2.00 16 16 N -0.85 -24.18 13.94 55.51 0.77 -23.41 16 17 Si 0.90 21.63 28.63 -169.99 -4.87 16.76 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.12 1.55 5.72 -3.71 -0.02 1.53 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.15 2.67 4.34 -54.73 -0.24 2.43 16 31 H 0.29 7.38 8.30 -40.82 -0.34 7.04 16 32 H 0.09 1.34 7.01 -51.93 -0.36 0.97 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 278.41 15.07 4.20 4.20 Total: -1.00 -30.95 278.41 -5.19 -36.14 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.33 Total: -1.40 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 0.14 Total: 9.41 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.26 Total: -33.90 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.58 Total: -31.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.87 Total: 16.76 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.95 -5.19 -36.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787538766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.538 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds