Wall clock time and date at job start Thu Apr 9 2020 12:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.52029 * 2 1 4 4 C 1.53038 * 109.49718 * 239.91506 * 2 1 3 5 5 C 1.53033 * 109.53469 * 178.68289 * 4 2 1 6 6 C 1.53193 * 109.31546 * 61.36966 * 5 4 2 7 7 N 1.46961 * 108.88543 * 305.44083 * 6 5 4 8 8 C 1.34779 * 120.65787 * 233.53702 * 7 6 5 9 9 O 1.21406 * 120.00220 * 171.19268 * 8 7 6 10 10 C 1.49023 * 119.99384 * 351.19643 * 8 7 6 11 11 O 1.21367 * 120.00062 * 353.20844 * 10 8 7 12 12 O 1.34502 * 119.99811 * 173.21667 * 10 8 7 13 13 C 1.34555 * 117.00100 * 179.97438 * 12 10 8 14 14 H 1.07998 * 119.99813 * 0.02562 * 13 12 10 15 15 C 1.39204 * 120.00411 * 179.97438 * 13 12 10 16 16 N 1.31161 * 120.00402 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99483 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47258 * 90.00213 * 17 15 13 19 19 H 1.48503 * 109.46722 * 209.99916 * 17 15 13 20 20 H 1.48496 * 109.47141 * 329.99709 * 17 15 13 21 21 C 1.46925 * 118.71690 * 53.35133 * 7 6 5 22 22 H 1.09004 * 109.47236 * 299.92252 * 1 2 3 23 23 H 1.09005 * 109.46763 * 59.92138 * 1 2 3 24 24 H 1.09002 * 109.47324 * 179.91813 * 1 2 3 25 25 H 1.08996 * 109.46361 * 298.70721 * 4 2 1 26 26 H 1.08997 * 109.46038 * 58.66643 * 4 2 1 27 27 H 1.09008 * 109.49875 * 181.31440 * 5 4 2 28 28 H 1.09003 * 109.50261 * 301.41157 * 5 4 2 29 29 H 1.09001 * 109.58958 * 65.14674 * 6 5 4 30 30 H 1.09000 * 109.58872 * 185.43532 * 6 5 4 31 31 H 0.97003 * 119.99952 * 180.02562 * 16 15 13 32 32 H 1.09003 * 109.59160 * 186.78224 * 21 7 6 33 33 H 1.09002 * 109.58389 * 66.50424 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 3.5708 -0.6950 -1.2659 6 6 4.1053 -1.4267 -0.0306 7 7 3.5045 -0.8320 1.1715 8 6 4.2805 -0.3910 2.1814 9 8 3.7883 0.2403 3.0941 10 6 5.7428 -0.6783 2.1774 11 8 6.2149 -1.4115 1.3333 12 8 6.5393 -0.1252 3.1094 13 6 7.8495 -0.4259 3.0498 14 1 8.2177 -1.0844 2.2771 15 6 8.7305 0.1126 3.9834 16 7 10.0075 -0.1809 3.9255 17 14 8.0936 1.2523 5.3195 18 1 7.7107 0.4529 6.5109 19 1 9.1566 2.2196 5.6931 20 1 6.9073 1.9904 4.8165 21 6 2.0413 -0.7237 1.2497 22 1 -0.3634 0.5126 0.8907 23 1 -0.3633 0.5151 -0.8893 24 1 -0.3634 -1.0277 -0.0015 25 1 1.6967 -1.7573 -1.2352 26 1 1.6582 -0.2246 -2.1388 27 1 3.9335 -1.1898 -2.1669 28 1 3.9159 0.3388 -1.2540 29 1 3.8375 -2.4818 -0.0865 30 1 5.1898 -1.3267 0.0125 31 1 10.6213 0.1941 4.5763 32 1 1.7637 -0.1578 2.1390 33 1 1.6033 -1.7206 1.2995 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787538766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:15 Heat of formation + Delta-G solvation = -125.403309 kcal Electronic energy + Delta-G solvation = -17702.519410 eV Core-core repulsion = 14728.308500 eV Total energy + Delta-G solvation = -2974.210910 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.11454 -40.54816 -38.77129 -37.78199 -34.80303 -34.59641 -32.85375 -28.96806 -27.77803 -26.90761 -24.52131 -23.26914 -21.67821 -20.69323 -20.26652 -18.87940 -18.09282 -17.51124 -17.25753 -16.31346 -16.15282 -15.69916 -15.38937 -15.20334 -14.75191 -14.54817 -14.34047 -14.09017 -13.66308 -13.39701 -13.03941 -12.77135 -12.58187 -12.50316 -12.27885 -12.02668 -11.93941 -11.80382 -11.65590 -11.32156 -10.97095 -10.37110 -9.85917 -8.71443 -6.53893 0.12385 1.08656 1.31991 1.33933 1.51812 1.93843 2.20415 2.61417 2.80761 3.70200 3.83666 3.84811 3.93351 4.06655 4.29727 4.39537 4.58165 4.66147 4.77338 4.85087 4.90309 4.94021 5.07327 5.17000 5.22546 5.29131 5.37045 5.41800 5.50571 5.67808 5.93245 6.23450 6.61377 6.64868 7.34521 8.39065 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043173 B = 0.006143 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.394457 B = 4556.742329 C = 5031.102837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.130 4.130 6 C 0.062 3.938 7 N -0.572 5.572 8 C 0.542 3.458 9 O -0.540 6.540 10 C 0.382 3.618 11 O -0.523 6.523 12 O -0.224 6.224 13 C -0.414 4.414 14 H 0.079 0.921 15 C 0.036 3.964 16 N -0.885 5.885 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.251 1.251 20 H -0.266 1.266 21 C 0.108 3.892 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.297 0.703 32 H 0.080 0.920 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 -0.153 -8.910 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.168 4.168 6 C -0.059 4.059 7 N -0.306 5.306 8 C 0.326 3.674 9 O -0.419 6.419 10 C 0.226 3.774 11 O -0.421 6.421 12 O -0.130 6.130 13 C -0.489 4.489 14 H 0.097 0.903 15 C -0.169 4.169 16 N -0.522 5.522 17 Si 0.788 3.212 18 H -0.182 1.182 19 H -0.174 1.174 20 H -0.190 1.190 21 C -0.012 4.012 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.743 0.013 -8.543 19.692 hybrid contribution 0.571 0.157 0.480 0.762 sum -17.171 0.170 -8.063 18.971 Atomic orbital electron populations 1.21721 0.92059 1.03083 1.02667 1.21502 0.97605 0.99152 0.94039 0.92217 1.21616 0.93857 1.01730 0.97473 1.21940 0.97210 1.00499 0.97188 1.22921 1.02381 0.97817 0.82736 1.47958 1.07522 1.58332 1.16824 1.18702 0.84635 0.80411 0.83665 1.90703 1.74519 1.39416 1.37236 1.23206 0.89328 0.82719 0.82098 1.90399 1.76558 1.37850 1.37261 1.83511 1.20357 1.61086 1.48041 1.20626 0.78692 1.32040 1.17570 0.90335 1.25454 0.94057 0.97962 0.99447 1.69514 1.03235 1.42584 1.36910 0.85298 0.79036 0.78774 0.78081 1.18228 1.17443 1.18989 1.22109 0.76138 1.02620 1.00335 0.92532 0.90975 0.91139 0.90170 0.89739 0.88427 0.92988 0.89687 0.87114 0.89207 0.90131 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.20 71.98 0.66 -1.12 16 2 C -0.10 -1.93 2.87 -10.72 -0.03 -1.96 16 3 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.11 -1.74 5.17 30.62 0.16 -1.58 16 5 C -0.13 -2.76 6.08 30.67 0.19 -2.58 16 6 C 0.06 1.79 5.97 86.36 0.52 2.30 16 7 N -0.57 -18.67 2.98 -820.87 -2.45 -21.11 16 8 C 0.54 23.34 7.72 87.14 0.67 24.01 16 9 O -0.54 -25.32 16.40 9.28 0.15 -25.16 16 10 C 0.38 19.42 7.80 70.72 0.55 19.97 16 11 O -0.52 -26.88 12.42 20.27 0.25 -26.63 16 12 O -0.22 -12.89 8.43 21.50 0.18 -12.71 16 13 C -0.41 -25.42 10.12 68.05 0.69 -24.73 16 14 H 0.08 5.25 7.08 -2.91 -0.02 5.23 16 15 C 0.04 2.06 5.50 85.03 0.47 2.53 16 16 N -0.88 -51.58 13.94 21.70 0.30 -51.27 16 17 Si 0.97 44.98 28.63 68.60 1.96 46.94 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 C 0.11 2.63 5.72 86.36 0.49 3.13 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.11 4.08 4.34 -46.71 -0.20 3.87 16 31 H 0.30 15.47 8.30 -92.71 -0.77 14.70 16 32 H 0.08 2.20 7.01 -2.39 -0.02 2.19 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -69.80 278.41 5.69 -64.11 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.92 Total: 5.86 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 4.37 Total: 19.97 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.14 Total: -72.39 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: 0.59 Total: -64.50 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.96 Total: 46.94 kcal Total: -69.80 5.69 -64.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787538766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.292 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds