Wall clock time and date at job start Thu Apr 9 2020 12:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86793 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47365 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99854 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99949 * 3 2 1 7 7 C 1.38756 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99348 * 180.02562 * 7 2 1 9 9 O 1.34912 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00123 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00115 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.46932 * 300.00352 * 12 10 9 14 14 C 1.53002 * 109.47318 * 59.99706 * 12 10 9 15 15 C 1.52992 * 109.47131 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47214 * 299.99846 * 15 14 12 17 17 C 1.53005 * 109.46828 * 60.00577 * 16 15 14 18 18 H 1.08999 * 109.47484 * 59.99367 * 17 16 15 19 19 C 1.50700 * 109.47164 * 180.02562 * 17 16 15 20 20 N 1.34779 * 119.99786 * 299.99484 * 19 17 16 21 21 O 1.21275 * 120.00570 * 119.99484 * 19 17 16 22 22 C 1.52992 * 109.47257 * 180.02562 * 12 10 9 23 23 H 0.97005 * 119.99363 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46989 * 300.00583 * 14 12 10 25 25 H 1.09002 * 109.46768 * 59.99928 * 14 12 10 26 26 H 1.08993 * 109.47710 * 60.00434 * 15 14 12 27 27 H 1.09005 * 109.47052 * 180.02562 * 15 14 12 28 28 H 1.08996 * 109.47435 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47113 * 300.00588 * 16 15 14 30 30 H 0.97003 * 119.99677 * 0.02562 * 20 19 17 31 31 H 0.96994 * 120.00335 * 180.02562 * 20 19 17 32 32 H 1.09004 * 109.47330 * 299.99977 * 22 12 10 33 33 H 1.09005 * 109.47124 * 59.99773 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4460 2.6526 0.7000 6 1 3.5461 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4332 0.0001 12 6 1.3809 -4.8393 0.0011 13 1 0.7583 -4.9295 0.8914 14 6 0.5061 -4.9666 -1.2477 15 6 -0.1890 -6.3295 -1.2468 16 6 0.8644 -7.4392 -1.2467 17 6 1.7390 -7.3120 0.0023 18 1 1.1165 -7.4017 0.8925 19 6 2.7769 -8.4046 0.0021 20 7 2.3947 -9.6971 0.0026 21 8 3.9560 -8.1210 0.0016 22 6 2.4345 -5.9486 0.0016 23 1 -0.4849 0.8401 -0.0004 24 1 -0.2445 -4.1763 -1.2476 25 1 1.1286 -4.8763 -2.1380 26 1 -0.8115 -6.4193 -0.3566 27 1 -0.8118 -6.4203 -2.1367 28 1 0.3692 -8.4102 -1.2455 29 1 1.4869 -7.3494 -2.1369 30 1 1.4516 -9.9239 0.0027 31 1 3.0627 -10.4004 0.0029 32 1 3.0573 -5.8586 -0.8884 33 1 3.0573 -5.8577 0.8916 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787824810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:28 Heat of formation + Delta-G solvation = -147.898014 kcal Electronic energy + Delta-G solvation = -17489.648077 eV Core-core repulsion = 14514.461723 eV Total energy + Delta-G solvation = -2975.186354 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.18067 -38.96748 -37.14240 -35.01462 -33.78008 -32.09899 -30.96283 -30.65029 -25.53403 -23.89801 -23.19759 -20.96702 -19.91296 -19.26550 -17.69555 -17.56638 -16.64747 -16.17334 -15.24565 -14.80845 -14.73492 -14.34195 -14.21036 -13.76052 -13.47687 -13.07406 -12.46778 -12.28614 -12.05796 -11.53862 -11.34084 -11.08444 -10.98520 -10.54867 -10.44168 -10.38508 -10.32324 -10.12807 -9.78799 -9.74696 -9.63977 -8.83513 -8.51370 -6.35354 -4.02354 2.62923 3.15771 3.22737 3.28920 3.43634 3.61252 4.00346 4.49447 4.67295 4.78019 4.95843 5.16009 5.24621 5.31669 5.40500 5.49350 5.55510 5.66744 5.77770 6.03078 6.06495 6.11491 6.36541 6.44224 6.63050 6.65544 6.74388 6.94987 7.22664 7.46649 8.02747 8.22537 8.80751 9.14346 9.94762 10.82951 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.046674 B = 0.005372 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.765658 B = 5211.410848 C = 5683.902180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.381 4.381 8 H 0.094 0.906 9 O -0.215 6.215 10 C 0.401 3.599 11 O -0.553 6.553 12 C -0.068 4.068 13 H 0.094 0.906 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.108 4.108 18 H 0.099 0.901 19 C 0.521 3.479 20 N -0.860 5.860 21 O -0.536 6.536 22 C -0.080 4.080 23 H 0.268 0.732 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.400 0.600 31 H 0.398 0.602 32 H 0.077 0.923 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 -16.538 -1.263 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.457 4.457 8 H 0.112 0.888 9 O -0.122 6.122 10 C 0.247 3.753 11 O -0.450 6.450 12 C -0.088 4.088 13 H 0.112 0.888 14 C -0.150 4.150 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.129 4.129 18 H 0.117 0.883 19 C 0.306 3.694 20 N -0.424 5.424 21 O -0.411 6.411 22 C -0.118 4.118 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.228 0.772 31 H 0.228 0.772 32 H 0.096 0.904 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.753 -15.956 -1.259 16.240 hybrid contribution 0.197 0.347 0.066 0.404 sum -2.556 -15.609 -1.194 15.862 Atomic orbital electron populations 1.69996 1.05934 1.27485 1.47110 1.25297 0.95788 0.98750 0.96358 0.85707 0.79087 0.79932 0.78685 1.19951 1.20391 1.19143 1.21218 0.92364 0.80042 1.52092 0.88840 1.83872 1.39310 1.13287 1.75735 1.23133 0.86636 0.87155 0.78343 1.90569 1.15795 1.88059 1.50529 1.20749 0.97097 0.90332 1.00584 0.88836 1.21533 0.99155 0.97449 0.96910 1.21532 0.97167 0.94115 1.02374 1.21569 0.97261 0.99067 0.96887 1.21396 0.96184 0.94483 1.00847 0.88283 1.20768 0.90121 0.83963 0.74586 1.43922 1.11873 1.07699 1.78919 1.90772 1.18851 1.83052 1.48435 1.21162 0.96396 0.89319 1.04879 0.92227 0.89879 0.91594 0.91461 0.91299 0.91757 0.91239 0.77209 0.77196 0.90450 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.62 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.38 -11.51 9.64 30.92 0.30 -11.21 16 8 H 0.09 2.87 6.86 -52.48 -0.36 2.51 16 9 O -0.21 -6.22 9.65 -20.69 -0.20 -6.42 16 10 C 0.40 10.15 7.20 36.01 0.26 10.41 16 11 O -0.55 -15.54 15.22 -19.05 -0.29 -15.83 16 12 C -0.07 -1.25 2.63 -91.77 -0.24 -1.49 16 13 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 14 C -0.11 -1.78 5.14 -26.73 -0.14 -1.92 16 15 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 16 C -0.11 -1.09 5.10 -26.73 -0.14 -1.23 16 17 C -0.11 -1.29 2.53 -91.74 -0.23 -1.52 16 18 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 19 C 0.52 6.63 7.43 -10.98 -0.08 6.54 16 20 N -0.86 -6.67 8.77 31.22 0.27 -6.39 16 21 O -0.54 -9.57 16.82 5.56 0.09 -9.48 16 22 C -0.08 -1.35 3.07 -26.71 -0.08 -1.43 16 23 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.40 1.82 8.25 -40.82 -0.34 1.48 16 31 H 0.40 2.69 8.93 -40.82 -0.36 2.33 16 32 H 0.08 1.47 8.06 -51.93 -0.42 1.06 16 33 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -36.72 282.12 -5.13 -41.84 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.38 Total: 2.33 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.61 Total: -2.18 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 1.03 Total: -31.25 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.40 Total: -31.72 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -36.72 -5.13 -41.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787824810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.053 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds