Wall clock time and date at job start Thu Apr 9 2020 12:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86793 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47365 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99854 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99949 * 3 2 1 7 7 C 1.38756 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99348 * 180.02562 * 7 2 1 9 9 O 1.34912 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00123 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00115 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.46932 * 300.00352 * 12 10 9 14 14 C 1.53002 * 109.47318 * 59.99706 * 12 10 9 15 15 C 1.52992 * 109.47131 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47214 * 299.99846 * 15 14 12 17 17 C 1.53005 * 109.46828 * 60.00577 * 16 15 14 18 18 H 1.08999 * 109.47484 * 59.99367 * 17 16 15 19 19 C 1.50700 * 109.47164 * 180.02562 * 17 16 15 20 20 N 1.34779 * 119.99786 * 299.99484 * 19 17 16 21 21 O 1.21275 * 120.00570 * 119.99484 * 19 17 16 22 22 C 1.52992 * 109.47257 * 180.02562 * 12 10 9 23 23 H 0.97005 * 119.99363 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46989 * 300.00583 * 14 12 10 25 25 H 1.09002 * 109.46768 * 59.99928 * 14 12 10 26 26 H 1.08993 * 109.47710 * 60.00434 * 15 14 12 27 27 H 1.09005 * 109.47052 * 180.02562 * 15 14 12 28 28 H 1.08996 * 109.47435 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47113 * 300.00588 * 16 15 14 30 30 H 0.97003 * 119.99677 * 0.02562 * 20 19 17 31 31 H 0.96994 * 120.00335 * 180.02562 * 20 19 17 32 32 H 1.09004 * 109.47330 * 299.99977 * 22 12 10 33 33 H 1.09005 * 109.47124 * 59.99773 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4460 2.6526 0.7000 6 1 3.5461 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4332 0.0001 12 6 1.3809 -4.8393 0.0011 13 1 0.7583 -4.9295 0.8914 14 6 0.5061 -4.9666 -1.2477 15 6 -0.1890 -6.3295 -1.2468 16 6 0.8644 -7.4392 -1.2467 17 6 1.7390 -7.3120 0.0023 18 1 1.1165 -7.4017 0.8925 19 6 2.7769 -8.4046 0.0021 20 7 2.3947 -9.6971 0.0026 21 8 3.9560 -8.1210 0.0016 22 6 2.4345 -5.9486 0.0016 23 1 -0.4849 0.8401 -0.0004 24 1 -0.2445 -4.1763 -1.2476 25 1 1.1286 -4.8763 -2.1380 26 1 -0.8115 -6.4193 -0.3566 27 1 -0.8118 -6.4203 -2.1367 28 1 0.3692 -8.4102 -1.2455 29 1 1.4869 -7.3494 -2.1369 30 1 1.4516 -9.9239 0.0027 31 1 3.0627 -10.4004 0.0029 32 1 3.0573 -5.8586 -0.8884 33 1 3.0573 -5.8577 0.8916 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787824810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:28 Heat of formation + Delta-G solvation = -176.361072 kcal Electronic energy + Delta-G solvation = -17490.882328 eV Core-core repulsion = 14514.461723 eV Total energy + Delta-G solvation = -2976.420605 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.54356 -40.66747 -38.49745 -37.11048 -34.73274 -34.30869 -32.19472 -31.82118 -27.67458 -25.05688 -24.71402 -22.15591 -21.28535 -20.60019 -19.86726 -18.81803 -17.94691 -17.58133 -16.70917 -16.61275 -16.24789 -16.07216 -15.57049 -14.95841 -14.75821 -14.55188 -14.08043 -13.59748 -13.47702 -13.31466 -13.08812 -12.48030 -12.29508 -12.24478 -12.17087 -12.01899 -11.65957 -11.60782 -11.38378 -10.84477 -10.77099 -10.69727 -10.60840 -8.55023 -6.34610 1.29395 1.32606 1.49412 1.63877 1.65754 2.10208 2.52218 2.83575 2.95694 3.68703 3.71947 3.81970 4.05204 4.15836 4.29320 4.40572 4.43897 4.50169 4.68024 4.82937 5.01493 5.09878 5.13087 5.19244 5.21071 5.31326 5.35424 5.49915 5.83105 5.95019 6.51602 6.67087 6.90259 7.40988 7.76904 8.65489 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.046674 B = 0.005372 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.765658 B = 5211.410848 C = 5683.902180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.000 4.000 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.256 1.256 6 H -0.268 1.268 7 C -0.426 4.426 8 H 0.074 0.926 9 O -0.238 6.238 10 C 0.393 3.607 11 O -0.590 6.590 12 C -0.060 4.060 13 H 0.119 0.881 14 C -0.110 4.110 15 C -0.104 4.104 16 C -0.105 4.105 17 C -0.099 4.099 18 H 0.134 0.866 19 C 0.520 3.480 20 N -0.830 5.830 21 O -0.599 6.599 22 C -0.073 4.073 23 H 0.279 0.721 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.421 0.579 31 H 0.407 0.593 32 H 0.044 0.956 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 -18.070 -1.276 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.201 4.201 3 Si 0.833 3.167 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.192 1.192 7 C -0.502 4.502 8 H 0.092 0.908 9 O -0.146 6.146 10 C 0.241 3.759 11 O -0.488 6.488 12 C -0.079 4.079 13 H 0.137 0.863 14 C -0.148 4.148 15 C -0.141 4.141 16 C -0.142 4.142 17 C -0.120 4.120 18 H 0.152 0.848 19 C 0.305 3.695 20 N -0.395 5.395 21 O -0.480 6.480 22 C -0.111 4.111 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.074 0.926 30 H 0.253 0.747 31 H 0.238 0.762 32 H 0.063 0.937 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.793 -17.559 -1.277 18.246 hybrid contribution 0.807 0.751 0.073 1.105 sum -3.986 -16.808 -1.204 17.316 Atomic orbital electron populations 1.70063 1.07433 1.29352 1.46751 1.26467 0.96913 1.02075 0.94628 0.84676 0.77650 0.74779 0.79550 1.18442 1.17963 1.19229 1.21377 0.91989 0.81574 1.55221 0.90790 1.83895 1.40050 1.13995 1.76687 1.24685 0.86650 0.88641 0.75904 1.90529 1.17743 1.88749 1.51783 1.20947 0.97600 0.86173 1.03140 0.86310 1.21544 0.98095 1.00608 0.94569 1.21521 0.97270 0.90555 1.04729 1.21612 0.96523 1.01171 0.94904 1.21358 0.96110 0.90813 1.03738 0.84847 1.20861 0.89141 0.85484 0.74005 1.43636 1.13482 1.06029 1.76306 1.90762 1.21326 1.84143 1.51765 1.21026 0.95764 0.92331 1.01965 0.91119 0.91866 0.93264 0.89081 0.88971 0.86750 0.92566 0.74709 0.76187 0.93688 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.56 13.67 21.63 0.30 -53.27 16 2 C 0.00 -0.02 5.49 84.87 0.47 0.45 16 3 Si 1.01 44.74 29.55 68.60 2.03 46.76 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.43 -26.93 9.64 67.94 0.66 -26.28 16 8 H 0.07 4.83 6.86 -2.91 -0.02 4.81 16 9 O -0.24 -14.49 9.65 14.91 0.14 -14.34 16 10 C 0.39 20.99 7.20 71.24 0.51 21.51 16 11 O -0.59 -35.44 15.22 20.77 0.32 -35.13 16 12 C -0.06 -2.22 2.63 -11.54 -0.03 -2.25 16 13 H 0.12 3.83 8.14 -2.38 -0.02 3.81 16 14 C -0.11 -3.45 5.14 30.59 0.16 -3.29 16 15 C -0.10 -1.89 5.92 30.59 0.18 -1.70 16 16 C -0.10 -1.66 5.10 30.60 0.16 -1.51 16 17 C -0.10 -2.13 2.53 -11.52 -0.03 -2.16 16 18 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 19 C 0.52 12.31 7.43 87.66 0.65 12.96 16 20 N -0.83 -9.90 8.77 -173.53 -1.52 -11.42 16 21 O -0.60 -21.79 16.82 -3.02 -0.05 -21.84 16 22 C -0.07 -2.53 3.07 30.61 0.09 -2.43 16 23 H 0.28 15.02 8.31 -92.70 -0.77 14.25 16 24 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.11 0.80 7.56 -2.39 -0.02 0.78 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.42 1.60 8.25 -92.71 -0.76 0.84 16 31 H 0.41 4.25 8.93 -92.71 -0.83 3.42 16 32 H 0.04 1.82 8.06 -2.38 -0.02 1.81 16 33 H 0.05 1.90 8.06 -2.38 -0.02 1.88 16 Total: -1.00 -87.09 282.12 3.57 -83.52 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -0.45 Total: 10.41 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 2.81 Total: -4.70 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -1.23 Total: -64.68 kcal Atomic # 8 Polarization: -71.72 SS G_CDS: 0.41 Total: -71.31 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -87.09 3.57 -83.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787824810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.837 kcal (2) G-P(sol) polarization free energy of solvation -87.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds