Wall clock time and date at job start Thu Apr 9 2020 12:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86801 * 119.99535 * 2 1 4 4 H 1.48501 * 109.47205 * 269.99841 * 3 2 1 5 5 H 1.48501 * 109.47042 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.47197 * 149.99670 * 3 2 1 7 7 C 1.38752 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99984 * 179.97438 * 7 2 1 9 9 O 1.34913 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.34316 * 117.00154 * 180.02562 * 9 7 2 11 11 O 1.21216 * 119.99921 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00390 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.46862 * 300.00140 * 12 10 9 14 14 C 1.53006 * 109.47239 * 59.99297 * 12 10 9 15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12 17 17 C 1.52996 * 109.46891 * 60.00410 * 16 15 14 18 18 H 1.09004 * 109.47368 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47592 * 59.99743 * 17 16 15 20 20 N 1.34774 * 119.99762 * 59.99789 * 19 17 16 21 21 O 1.21279 * 120.00190 * 240.00518 * 19 17 16 22 22 C 1.52997 * 109.47466 * 179.97438 * 12 10 9 23 23 H 0.96999 * 120.00269 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47002 * 60.00070 * 14 12 10 25 25 H 1.09000 * 109.47050 * 300.00336 * 14 12 10 26 26 H 1.09002 * 109.47045 * 180.02562 * 15 14 12 27 27 H 1.09001 * 109.47375 * 59.99966 * 15 14 12 28 28 H 1.08992 * 109.47056 * 300.00064 * 16 15 14 29 29 H 1.09004 * 109.47006 * 180.02562 * 16 15 14 30 30 H 0.97004 * 120.00087 * 359.97438 * 20 19 17 31 31 H 0.96997 * 119.99962 * 180.02562 * 20 19 17 32 32 H 1.09002 * 109.47153 * 59.99773 * 22 12 10 33 33 H 1.09001 * 109.46832 * 299.99964 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5458 1.4404 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2015 0.0001 9 8 1.3338 -2.3700 0.0005 10 6 2.0653 -3.4964 0.0016 11 8 3.2758 -3.4329 0.0020 12 6 1.3813 -4.8392 0.0023 13 1 0.7582 -4.9291 0.8920 14 6 0.5075 -4.9671 -1.2472 15 6 -0.1875 -6.3302 -1.2462 16 6 0.8660 -7.4397 -1.2449 17 6 1.7397 -7.3118 0.0045 18 1 2.4900 -8.1026 0.0058 19 6 0.8783 -7.4356 1.2349 20 7 0.1667 -8.5599 1.4489 21 8 0.8253 -6.5234 2.0323 22 6 2.4351 -5.9485 0.0028 23 1 -0.4850 0.8400 -0.0004 24 1 1.1305 -4.8772 -2.1371 25 1 -0.2433 -4.1769 -1.2479 26 1 -0.8096 -6.4214 -2.1365 27 1 -0.8106 -6.4197 -0.3563 28 1 1.4891 -7.3502 -2.1347 29 1 0.3709 -8.4108 -1.2446 30 1 0.2087 -9.2894 0.8108 31 1 -0.3881 -8.6395 2.2406 32 1 3.0579 -5.8575 0.8927 33 1 3.0578 -5.8584 -0.8872 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787824812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:30 Heat of formation + Delta-G solvation = -141.454075 kcal Electronic energy + Delta-G solvation = -17876.912449 eV Core-core repulsion = 14902.005526 eV Total energy + Delta-G solvation = -2974.906924 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46511 -38.75427 -36.75880 -34.92822 -33.79118 -32.02578 -30.87107 -30.54992 -25.45549 -23.81500 -23.11065 -21.38428 -19.75869 -19.16899 -17.56417 -17.19774 -16.51306 -16.24876 -15.45150 -14.64837 -14.57572 -14.28459 -13.99028 -13.88594 -13.42308 -12.82191 -12.29177 -12.04651 -11.95866 -11.82831 -11.47427 -11.10932 -10.91995 -10.64354 -10.38699 -10.28196 -10.21422 -9.95203 -9.70710 -9.61459 -9.38971 -8.71472 -8.44811 -6.28040 -3.95127 2.70507 3.20242 3.26058 3.32820 3.52430 3.73062 4.05846 4.54569 4.77019 4.82034 4.94385 5.15848 5.23684 5.44868 5.49779 5.52630 5.67523 5.71727 5.92613 6.01395 6.14481 6.22750 6.37003 6.50745 6.66303 6.75211 6.88719 7.06572 7.30259 7.52936 8.10000 8.32164 8.88694 9.21206 10.04559 10.90565 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.005888 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.852647 B = 4754.191832 C = 4801.511019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.380 4.380 8 H 0.093 0.907 9 O -0.215 6.215 10 C 0.408 3.592 11 O -0.561 6.561 12 C -0.081 4.081 13 H 0.119 0.881 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.109 4.109 18 H 0.098 0.902 19 C 0.519 3.481 20 N -0.860 5.860 21 O -0.527 6.527 22 C -0.079 4.079 23 H 0.267 0.733 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.398 0.602 32 H 0.074 0.926 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 -17.721 -2.404 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.111 0.889 9 O -0.122 6.122 10 C 0.254 3.746 11 O -0.459 6.459 12 C -0.100 4.100 13 H 0.136 0.864 14 C -0.149 4.149 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.130 4.130 18 H 0.116 0.884 19 C 0.305 3.695 20 N -0.425 5.425 21 O -0.402 6.402 22 C -0.117 4.117 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.369 -16.817 -1.995 16.991 hybrid contribution 0.190 0.356 0.055 0.407 sum -1.179 -16.462 -1.940 16.618 Atomic orbital electron populations 1.69999 1.05938 1.27376 1.47270 1.25297 0.95771 0.98734 0.96493 0.85713 0.79068 0.80045 0.78580 1.20010 1.20429 1.19189 1.21204 0.92300 0.80169 1.51984 0.88925 1.83887 1.39318 1.13300 1.75744 1.23230 0.86522 0.87224 0.77606 1.90518 1.15939 1.88226 1.51215 1.21007 0.97654 0.89690 1.01606 0.86382 1.21511 0.99204 0.97164 0.96976 1.21587 0.97449 0.94670 1.02056 1.21574 0.97576 0.98805 0.96834 1.21440 0.97714 1.00822 0.93041 0.88371 1.20745 0.79691 0.81641 0.87462 1.43927 1.50614 1.19208 1.28701 1.90746 1.64212 1.38257 1.46998 1.21154 0.96780 0.90122 1.03648 0.92292 0.91808 0.90155 0.91406 0.92004 0.90442 0.91809 0.77391 0.77146 0.90689 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.57 13.67 55.48 0.76 -25.81 16 2 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 3 Si 0.94 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.38 -11.88 9.64 30.92 0.30 -11.58 16 8 H 0.09 2.91 6.86 -52.48 -0.36 2.55 16 9 O -0.22 -6.57 9.65 -20.69 -0.20 -6.77 16 10 C 0.41 10.88 7.20 36.00 0.26 11.14 16 11 O -0.56 -16.05 15.22 -19.06 -0.29 -16.34 16 12 C -0.08 -1.65 2.33 -91.77 -0.21 -1.86 16 13 H 0.12 2.58 5.51 -51.93 -0.29 2.30 16 14 C -0.11 -1.92 5.13 -26.73 -0.14 -2.06 16 15 C -0.12 -1.52 5.70 -26.73 -0.15 -1.67 16 16 C -0.11 -1.09 5.35 -26.73 -0.14 -1.23 16 17 C -0.11 -1.29 3.01 -91.75 -0.28 -1.56 16 18 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 19 C 0.52 6.81 5.91 -10.99 -0.06 6.74 16 20 N -0.86 -7.07 8.77 31.22 0.27 -6.79 16 21 O -0.53 -9.70 14.50 5.56 0.08 -9.62 16 22 C -0.08 -1.33 3.67 -26.71 -0.10 -1.43 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.43 7.57 -51.93 -0.39 0.04 16 30 H 0.40 1.92 8.25 -40.82 -0.34 1.59 16 31 H 0.40 2.98 8.93 -40.82 -0.36 2.61 16 32 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 33 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 LS Contribution 275.60 15.07 4.15 4.15 Total: -1.00 -37.56 275.60 -5.07 -42.64 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.20 Total: 3.69 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.62 Total: -2.41 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 1.03 Total: -32.60 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.41 Total: -32.73 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -37.56 -5.07 -42.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787824812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.818 kcal (2) G-P(sol) polarization free energy of solvation -37.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds