Wall clock time and date at job start Thu Apr 9 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86801 * 119.99535 * 2 1 4 4 H 1.48501 * 109.47205 * 269.99841 * 3 2 1 5 5 H 1.48501 * 109.47042 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.47197 * 149.99670 * 3 2 1 7 7 C 1.38752 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99984 * 179.97438 * 7 2 1 9 9 O 1.34913 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.34316 * 117.00154 * 180.02562 * 9 7 2 11 11 O 1.21216 * 119.99921 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00390 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.46862 * 300.00140 * 12 10 9 14 14 C 1.53006 * 109.47239 * 59.99297 * 12 10 9 15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12 17 17 C 1.52996 * 109.46891 * 60.00410 * 16 15 14 18 18 H 1.09004 * 109.47368 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47592 * 59.99743 * 17 16 15 20 20 N 1.34774 * 119.99762 * 59.99789 * 19 17 16 21 21 O 1.21279 * 120.00190 * 240.00518 * 19 17 16 22 22 C 1.52997 * 109.47466 * 179.97438 * 12 10 9 23 23 H 0.96999 * 120.00269 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47002 * 60.00070 * 14 12 10 25 25 H 1.09000 * 109.47050 * 300.00336 * 14 12 10 26 26 H 1.09002 * 109.47045 * 180.02562 * 15 14 12 27 27 H 1.09001 * 109.47375 * 59.99966 * 15 14 12 28 28 H 1.08992 * 109.47056 * 300.00064 * 16 15 14 29 29 H 1.09004 * 109.47006 * 180.02562 * 16 15 14 30 30 H 0.97004 * 120.00087 * 359.97438 * 20 19 17 31 31 H 0.96997 * 119.99962 * 180.02562 * 20 19 17 32 32 H 1.09002 * 109.47153 * 59.99773 * 22 12 10 33 33 H 1.09001 * 109.46832 * 299.99964 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5458 1.4404 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2015 0.0001 9 8 1.3338 -2.3700 0.0005 10 6 2.0653 -3.4964 0.0016 11 8 3.2758 -3.4329 0.0020 12 6 1.3813 -4.8392 0.0023 13 1 0.7582 -4.9291 0.8920 14 6 0.5075 -4.9671 -1.2472 15 6 -0.1875 -6.3302 -1.2462 16 6 0.8660 -7.4397 -1.2449 17 6 1.7397 -7.3118 0.0045 18 1 2.4900 -8.1026 0.0058 19 6 0.8783 -7.4356 1.2349 20 7 0.1667 -8.5599 1.4489 21 8 0.8253 -6.5234 2.0323 22 6 2.4351 -5.9485 0.0028 23 1 -0.4850 0.8400 -0.0004 24 1 1.1305 -4.8772 -2.1371 25 1 -0.2433 -4.1769 -1.2479 26 1 -0.8096 -6.4214 -2.1365 27 1 -0.8106 -6.4197 -0.3563 28 1 1.4891 -7.3502 -2.1347 29 1 0.3709 -8.4108 -1.2446 30 1 0.2087 -9.2894 0.8108 31 1 -0.3881 -8.6395 2.2406 32 1 3.0579 -5.8575 0.8927 33 1 3.0578 -5.8584 -0.8872 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787824812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:29 Heat of formation + Delta-G solvation = -171.026854 kcal Electronic energy + Delta-G solvation = -17878.194821 eV Core-core repulsion = 14902.005526 eV Total energy + Delta-G solvation = -2976.189296 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.77388 -40.67601 -38.13017 -37.06140 -34.78996 -34.31727 -32.11335 -31.80541 -27.67390 -25.00915 -24.64605 -22.55169 -21.52279 -20.31685 -19.87740 -18.60267 -17.85864 -17.36607 -17.03906 -16.67761 -16.26381 -15.77704 -15.68002 -15.03696 -14.65761 -14.52300 -13.88034 -13.53758 -13.37423 -13.15383 -13.11781 -12.96937 -12.38872 -12.21055 -12.14602 -11.98241 -11.85348 -11.55799 -11.13172 -10.83923 -10.71323 -10.66019 -10.45805 -8.55356 -6.36022 1.29354 1.30878 1.49314 1.63538 1.73583 2.11550 2.67593 2.77489 2.95036 3.70023 3.75535 3.86907 4.09175 4.16093 4.29266 4.42077 4.47912 4.60051 4.69125 4.87275 5.01314 5.03474 5.14223 5.14907 5.22347 5.26033 5.38043 5.45656 5.82176 6.00744 6.57330 6.65221 6.89014 7.47789 7.78129 8.65991 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.005888 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.852647 B = 4754.191832 C = 4801.511019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 1.021 2.979 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.426 4.426 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.398 3.602 11 O -0.587 6.587 12 C -0.074 4.074 13 H 0.103 0.897 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.100 4.100 18 H 0.142 0.858 19 C 0.515 3.485 20 N -0.832 5.832 21 O -0.593 6.593 22 C -0.076 4.076 23 H 0.279 0.721 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.420 0.580 31 H 0.405 0.595 32 H 0.046 0.954 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 -19.677 -3.625 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.206 4.206 3 Si 0.839 3.161 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.502 4.502 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.246 3.754 11 O -0.485 6.485 12 C -0.093 4.093 13 H 0.121 0.879 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.141 4.141 17 C -0.121 4.121 18 H 0.159 0.841 19 C 0.301 3.699 20 N -0.397 5.397 21 O -0.473 6.473 22 C -0.114 4.114 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.252 0.748 31 H 0.236 0.764 32 H 0.065 0.935 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.609 -18.866 -3.241 19.210 hybrid contribution 0.234 0.887 0.461 1.026 sum -1.375 -17.979 -2.781 18.245 Atomic orbital electron populations 1.70091 1.07735 1.29360 1.47028 1.26610 0.96941 1.02445 0.94594 0.84602 0.77549 0.74271 0.79710 1.18012 1.18199 1.18975 1.21453 0.92113 0.81516 1.55108 0.90383 1.83919 1.40423 1.14278 1.76781 1.24689 0.86682 0.88484 0.75543 1.90465 1.17220 1.88779 1.52034 1.21187 0.98654 0.86919 1.02572 0.87926 1.21509 0.98117 0.99726 0.95228 1.21586 0.98172 0.92353 1.03003 1.21653 0.96681 0.99760 0.95997 1.21458 0.98657 0.98376 0.93624 0.84084 1.21019 0.79867 0.81847 0.87181 1.43666 1.48696 1.18196 1.29112 1.90736 1.66547 1.40847 1.49201 1.21132 0.95865 0.92034 1.02386 0.91177 0.91467 0.93507 0.88696 0.92800 0.88854 0.86908 0.74810 0.76406 0.93519 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.70 13.67 21.62 0.30 -56.41 16 2 C -0.01 -0.37 5.49 84.87 0.47 0.09 16 3 Si 1.02 46.07 29.55 68.60 2.03 48.10 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.43 -28.01 9.64 67.94 0.66 -27.36 16 8 H 0.08 5.20 6.86 -2.91 -0.02 5.18 16 9 O -0.25 -16.00 9.65 14.89 0.14 -15.86 16 10 C 0.40 22.61 7.20 71.23 0.51 23.12 16 11 O -0.59 -35.48 15.22 20.76 0.32 -35.17 16 12 C -0.07 -3.18 2.33 -11.54 -0.03 -3.21 16 13 H 0.10 4.80 5.51 -2.39 -0.01 4.79 16 14 C -0.11 -3.81 5.13 30.60 0.16 -3.65 16 15 C -0.11 -2.59 5.70 30.59 0.17 -2.42 16 16 C -0.10 -1.55 5.35 30.59 0.16 -1.39 16 17 C -0.10 -2.07 3.01 -11.52 -0.03 -2.11 16 18 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 19 C 0.51 12.57 5.91 87.66 0.52 13.09 16 20 N -0.83 -10.84 8.77 -173.53 -1.52 -12.36 16 21 O -0.59 -22.32 14.50 -3.03 -0.04 -22.37 16 22 C -0.08 -2.58 3.67 30.61 0.11 -2.46 16 23 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.05 1.92 8.11 -2.39 -0.02 1.90 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.33 7.22 -2.39 -0.02 1.31 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 0.73 7.57 -2.38 -0.02 0.71 16 30 H 0.42 1.87 8.25 -92.71 -0.76 1.11 16 31 H 0.40 4.96 8.93 -92.71 -0.83 4.13 16 32 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 33 H 0.08 2.57 8.10 -2.39 -0.02 2.56 16 Total: -1.00 -89.56 275.60 3.47 -86.09 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.45 Total: 14.26 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 2.70 Total: -6.29 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.23 Total: -68.76 kcal Atomic # 8 Polarization: -73.81 SS G_CDS: 0.42 Total: -73.39 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -89.56 3.47 -86.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787824812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.937 kcal (2) G-P(sol) polarization free energy of solvation -89.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds