Wall clock time and date at job start Thu Apr 9 2020 12:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48504 * 109.47076 * 270.00101 * 3 2 1 5 5 H 1.48498 * 109.46910 * 29.99850 * 3 2 1 6 6 H 1.48495 * 109.47065 * 149.99862 * 3 2 1 7 7 C 1.38952 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00062 * 199.29418 * 7 2 1 9 9 N 1.37099 * 119.99946 * 19.30267 * 7 2 1 10 10 C 1.34779 * 120.00206 * 42.41805 * 9 7 2 11 11 O 1.21294 * 119.99618 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00042 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.47090 * 179.97438 * 12 10 9 14 14 O 1.43756 * 109.63540 * 293.90518 * 13 12 10 15 15 C 1.44576 * 104.91969 * 215.70886 * 14 13 12 16 16 C 1.54910 * 101.64060 * 36.27128 * 15 14 13 17 17 O 1.43370 * 109.63530 * 174.69040 * 13 12 10 18 18 C 1.46502 * 119.99915 * 222.69342 * 9 7 2 19 19 C 1.52998 * 117.49637 * 3.07036 * 18 9 7 20 20 C 1.52997 * 60.00076 * 252.51389 * 19 18 9 21 21 H 0.97002 * 119.99910 * 354.78104 * 1 2 3 22 22 H 1.08999 * 109.47503 * 299.99760 * 12 10 9 23 23 H 1.09008 * 109.47036 * 59.99943 * 12 10 9 24 24 H 1.09006 * 109.62975 * 54.30089 * 13 12 10 25 25 H 1.09004 * 111.09323 * 278.15705 * 15 14 13 26 26 H 1.08999 * 110.97887 * 154.33394 * 15 14 13 27 27 H 1.09003 * 110.69504 * 205.96407 * 16 15 14 28 28 H 1.08998 * 110.84407 * 82.81820 * 16 15 14 29 29 H 1.09000 * 115.54921 * 148.78394 * 18 9 7 30 30 H 1.09001 * 117.50284 * 0.02562 * 19 18 9 31 31 H 1.09003 * 117.49762 * 145.01851 * 19 18 9 32 32 H 1.09004 * 117.49735 * 252.51182 * 20 19 18 33 33 H 1.09000 * 117.51710 * 107.48572 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0434 -1.2295 0.3096 9 7 1.3811 -2.3575 -0.3914 10 6 0.5727 -2.3521 -1.4698 11 8 0.4002 -1.3260 -2.0933 12 6 -0.1177 -3.6205 -1.9003 13 6 -0.9694 -3.3420 -3.1404 14 8 -2.0436 -2.4501 -2.7983 15 6 -3.1627 -2.8901 -3.6010 16 6 -2.9636 -4.4263 -3.5995 17 8 -1.5290 -4.5694 -3.6261 18 6 1.5843 -3.5952 0.3655 19 6 2.4506 -3.5193 1.6244 20 6 2.9894 -4.2009 0.3651 21 1 -0.4850 0.8366 0.0764 22 1 0.6290 -4.3791 -2.1349 23 1 -0.7575 -3.9778 -1.0933 24 1 -0.3506 -2.8897 -3.9155 25 1 -3.1010 -2.4896 -4.6130 26 1 -4.1091 -2.6188 -3.1333 27 1 -3.4117 -4.8737 -4.4867 28 1 -3.3783 -4.8702 -2.6945 29 1 0.7394 -4.2838 0.3763 30 1 2.8689 -2.5483 1.8897 31 1 2.1755 -4.1578 2.4639 32 1 3.0688 -5.2880 0.3760 33 1 3.7624 -3.6787 -0.1987 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793185605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:33 Heat of formation + Delta-G solvation = -77.251196 kcal Electronic energy + Delta-G solvation = -18118.733768 eV Core-core repulsion = 15146.610890 eV Total energy + Delta-G solvation = -2972.122878 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00283 -38.34336 -35.98491 -34.56891 -32.81452 -31.39329 -30.60757 -28.20020 -24.95336 -23.07261 -22.28651 -21.62464 -21.01944 -19.10100 -17.32430 -16.34777 -16.03719 -15.80890 -15.52741 -14.63751 -14.30615 -14.16587 -13.67940 -13.43143 -12.93767 -12.75275 -12.38702 -12.21305 -11.67830 -11.45615 -11.11930 -10.93171 -10.85211 -10.79002 -10.40814 -10.10221 -9.93076 -9.91167 -9.69236 -9.23760 -8.63456 -7.89618 -6.94278 -6.01007 -3.76318 3.35621 3.42447 3.45904 3.72775 4.21592 4.27925 4.44883 4.79361 4.84436 4.97318 5.06394 5.23473 5.36784 5.55629 5.59315 5.61907 5.69019 5.74067 5.82909 5.95897 6.09595 6.10012 6.26242 6.30641 6.51115 6.53623 6.80308 6.97292 7.48964 7.69474 8.34635 9.14137 9.25486 9.75553 10.39248 11.07143 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.009058 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.240108 B = 3090.404444 C = 4035.104703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.352 4.352 8 H 0.077 0.923 9 N -0.429 5.429 10 C 0.486 3.514 11 O -0.522 6.522 12 C -0.147 4.147 13 C 0.252 3.748 14 O -0.344 6.344 15 C 0.010 3.990 16 C 0.021 3.979 17 O -0.393 6.393 18 C 0.076 3.924 19 C -0.175 4.175 20 C -0.208 4.208 21 H 0.263 0.737 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -9.155 -3.094 10.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.138 4.138 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.095 0.905 9 N -0.151 5.151 10 C 0.273 3.727 11 O -0.399 6.399 12 C -0.188 4.188 13 C 0.157 3.843 14 O -0.263 6.263 15 C -0.067 4.067 16 C -0.056 4.056 17 O -0.315 6.315 18 C -0.031 4.031 19 C -0.212 4.212 20 C -0.247 4.247 21 H 0.073 0.927 22 H 0.111 0.889 23 H 0.101 0.899 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.718 -8.464 -3.405 9.852 hybrid contribution 0.181 0.678 0.143 0.716 sum -3.537 -7.786 -3.262 9.153 Atomic orbital electron populations 1.69857 1.06434 1.27265 1.42171 1.25220 0.94783 0.99254 0.94557 0.86242 0.79249 0.82433 0.78235 1.20410 1.21400 1.20006 1.18829 0.94970 0.84077 1.50032 0.90517 1.42763 1.43940 1.06146 1.22256 1.19421 0.82985 0.88468 0.81781 1.90552 1.61817 1.33185 1.54328 1.22010 0.99412 0.99759 0.97619 1.23763 0.88568 0.76923 0.95020 1.89515 1.20343 1.53214 1.63276 1.24298 0.92467 0.92848 0.97069 1.24128 0.82187 0.96668 1.02577 1.88846 1.18587 1.37691 1.86364 1.21683 0.92358 0.91356 0.97690 1.23058 1.04608 1.02556 0.91001 1.23316 0.99927 0.98618 1.02871 0.92679 0.88938 0.89912 0.89320 0.91202 0.87900 0.88849 0.90998 0.88114 0.87510 0.89864 0.89827 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -25.19 11.64 55.50 0.65 -24.55 16 2 C 0.07 2.11 4.35 -17.47 -0.08 2.03 16 3 Si 0.91 22.48 29.60 -169.99 -5.03 17.44 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.35 -9.85 8.01 -14.93 -0.12 -9.97 16 8 H 0.08 2.07 7.18 -52.48 -0.38 1.70 16 9 N -0.43 -11.07 2.85 -107.73 -0.31 -11.38 16 10 C 0.49 12.77 6.86 -10.99 -0.08 12.69 16 11 O -0.52 -15.77 13.08 -7.38 -0.10 -15.87 16 12 C -0.15 -3.04 4.41 -27.89 -0.12 -3.17 16 13 C 0.25 4.99 3.55 37.16 0.13 5.13 16 14 O -0.34 -7.28 10.65 -64.39 -0.69 -7.96 16 15 C 0.01 0.15 7.95 38.17 0.30 0.45 16 16 C 0.02 0.27 8.07 38.17 0.31 0.58 16 17 O -0.39 -6.64 11.22 -59.05 -0.66 -7.30 16 18 C 0.08 1.56 5.88 -67.93 -0.40 1.16 16 19 C -0.17 -3.23 9.79 -26.73 -0.26 -3.49 16 20 C -0.21 -3.65 10.36 -26.73 -0.28 -3.92 16 21 H 0.26 7.73 8.32 -40.82 -0.34 7.39 16 22 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 23 H 0.08 1.65 7.56 -51.92 -0.39 1.26 16 24 H 0.09 1.84 7.94 -51.93 -0.41 1.42 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.88 6.95 -51.93 -0.36 1.52 16 30 H 0.11 2.19 6.68 -51.93 -0.35 1.84 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 279.31 15.07 4.21 4.21 Total: -1.00 -34.69 279.31 -6.92 -41.61 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.40 Total: 2.30 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.59 Total: 1.49 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.34 Total: -35.93 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.44 Total: -31.13 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.69 -6.92 -41.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793185605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.639 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds