Wall clock time and date at job start Thu Apr 9 2020 12:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48504 * 109.47076 * 270.00101 * 3 2 1 5 5 H 1.48498 * 109.46910 * 29.99850 * 3 2 1 6 6 H 1.48495 * 109.47065 * 149.99862 * 3 2 1 7 7 C 1.38952 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00062 * 199.29418 * 7 2 1 9 9 N 1.37099 * 119.99946 * 19.30267 * 7 2 1 10 10 C 1.34779 * 120.00206 * 42.41805 * 9 7 2 11 11 O 1.21294 * 119.99618 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00042 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.47090 * 179.97438 * 12 10 9 14 14 O 1.43756 * 109.63540 * 293.90518 * 13 12 10 15 15 C 1.44576 * 104.91969 * 215.70886 * 14 13 12 16 16 C 1.54910 * 101.64060 * 36.27128 * 15 14 13 17 17 O 1.43370 * 109.63530 * 174.69040 * 13 12 10 18 18 C 1.46502 * 119.99915 * 222.69342 * 9 7 2 19 19 C 1.52998 * 117.49637 * 3.07036 * 18 9 7 20 20 C 1.52997 * 60.00076 * 252.51389 * 19 18 9 21 21 H 0.97002 * 119.99910 * 354.78104 * 1 2 3 22 22 H 1.08999 * 109.47503 * 299.99760 * 12 10 9 23 23 H 1.09008 * 109.47036 * 59.99943 * 12 10 9 24 24 H 1.09006 * 109.62975 * 54.30089 * 13 12 10 25 25 H 1.09004 * 111.09323 * 278.15705 * 15 14 13 26 26 H 1.08999 * 110.97887 * 154.33394 * 15 14 13 27 27 H 1.09003 * 110.69504 * 205.96407 * 16 15 14 28 28 H 1.08998 * 110.84407 * 82.81820 * 16 15 14 29 29 H 1.09000 * 115.54921 * 148.78394 * 18 9 7 30 30 H 1.09001 * 117.50284 * 0.02562 * 19 18 9 31 31 H 1.09003 * 117.49762 * 145.01851 * 19 18 9 32 32 H 1.09004 * 117.49735 * 252.51182 * 20 19 18 33 33 H 1.09000 * 117.51710 * 107.48572 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0434 -1.2295 0.3096 9 7 1.3811 -2.3575 -0.3914 10 6 0.5727 -2.3521 -1.4698 11 8 0.4002 -1.3260 -2.0933 12 6 -0.1177 -3.6205 -1.9003 13 6 -0.9694 -3.3420 -3.1404 14 8 -2.0436 -2.4501 -2.7983 15 6 -3.1627 -2.8901 -3.6010 16 6 -2.9636 -4.4263 -3.5995 17 8 -1.5290 -4.5694 -3.6261 18 6 1.5843 -3.5952 0.3655 19 6 2.4506 -3.5193 1.6244 20 6 2.9894 -4.2009 0.3651 21 1 -0.4850 0.8366 0.0764 22 1 0.6290 -4.3791 -2.1349 23 1 -0.7575 -3.9778 -1.0933 24 1 -0.3506 -2.8897 -3.9155 25 1 -3.1010 -2.4896 -4.6130 26 1 -4.1091 -2.6188 -3.1333 27 1 -3.4117 -4.8737 -4.4867 28 1 -3.3783 -4.8702 -2.6945 29 1 0.7394 -4.2838 0.3763 30 1 2.8689 -2.5483 1.8897 31 1 2.1755 -4.1578 2.4639 32 1 3.0688 -5.2880 0.3760 33 1 3.7624 -3.6787 -0.1987 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793185605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:32 Heat of formation + Delta-G solvation = -101.582740 kcal Electronic energy + Delta-G solvation = -18119.788863 eV Core-core repulsion = 15146.610890 eV Total energy + Delta-G solvation = -2973.177973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39545 -40.15121 -37.72747 -35.94405 -34.81351 -33.13294 -32.36287 -29.61544 -26.93487 -24.34965 -23.79969 -23.06260 -22.70345 -20.98218 -18.86272 -17.91347 -17.67098 -17.44793 -17.01947 -16.53786 -15.98369 -15.54750 -15.45438 -14.92888 -14.53938 -14.28949 -13.97140 -13.60495 -13.43161 -13.17891 -12.89775 -12.74792 -12.53853 -12.26283 -12.16247 -12.01865 -11.64542 -11.22415 -11.12738 -10.76467 -10.62091 -9.89756 -8.94898 -8.15864 -5.93784 1.35480 1.44372 1.49054 2.23940 2.42892 2.50250 2.94387 3.14033 3.26549 3.39754 3.73290 3.90917 4.00100 4.10942 4.14582 4.25108 4.30465 4.38644 4.47923 4.62477 4.70014 4.72129 4.88295 4.91036 5.02704 5.07990 5.30464 5.47572 5.52090 6.15591 6.22727 7.05558 7.23988 7.73082 8.39996 8.91847 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.009058 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.240108 B = 3090.404444 C = 4035.104703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.359 4.359 8 H 0.079 0.921 9 N -0.445 5.445 10 C 0.470 3.530 11 O -0.575 6.575 12 C -0.132 4.132 13 C 0.259 3.741 14 O -0.390 6.390 15 C 0.001 3.999 16 C 0.021 3.979 17 O -0.396 6.396 18 C 0.041 3.959 19 C -0.171 4.171 20 C -0.178 4.178 21 H 0.257 0.743 22 H 0.118 0.882 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -11.261 -2.807 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.187 4.187 3 Si 0.795 3.205 4 H -0.219 1.219 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.487 4.487 8 H 0.097 0.903 9 N -0.167 5.167 10 C 0.259 3.741 11 O -0.456 6.456 12 C -0.173 4.173 13 C 0.164 3.836 14 O -0.311 6.311 15 C -0.075 4.075 16 C -0.055 4.055 17 O -0.318 6.318 18 C -0.064 4.064 19 C -0.208 4.208 20 C -0.217 4.217 21 H 0.066 0.934 22 H 0.136 0.864 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.578 -10.617 -3.086 11.621 hybrid contribution 0.128 1.233 0.033 1.240 sum -3.449 -9.385 -3.054 10.455 Atomic orbital electron populations 1.69982 1.07972 1.27400 1.44558 1.26058 0.95486 1.02592 0.94558 0.85330 0.79072 0.78705 0.77440 1.21924 1.20743 1.17661 1.19103 0.95260 0.85411 1.48898 0.90311 1.43007 1.43553 1.07302 1.22793 1.20335 0.82770 0.89654 0.81367 1.90504 1.63604 1.35499 1.55980 1.21872 0.99785 0.97342 0.98260 1.23447 0.88536 0.77771 0.93887 1.89477 1.22345 1.54440 1.64840 1.24664 0.91549 0.94114 0.97206 1.24438 0.80182 0.95667 1.05198 1.88823 1.20870 1.35994 1.86071 1.22009 0.94917 0.90163 0.99264 1.23117 1.03533 1.02270 0.91931 1.23332 0.96703 1.00697 1.00959 0.93373 0.86394 0.89117 0.91335 0.90117 0.85762 0.84937 0.89673 0.85976 0.90091 0.86441 0.85614 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.61 11.64 21.66 0.25 -54.36 16 2 C 0.02 1.16 4.35 84.93 0.37 1.53 16 3 Si 0.97 47.20 29.60 68.60 2.03 49.23 16 4 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.36 -20.40 8.01 84.04 0.67 -19.73 16 8 H 0.08 4.30 7.18 -2.91 -0.02 4.28 16 9 N -0.45 -23.10 2.85 -613.12 -1.75 -24.85 16 10 C 0.47 25.11 6.86 87.66 0.60 25.71 16 11 O -0.58 -36.11 13.08 9.28 0.12 -35.99 16 12 C -0.13 -5.39 4.41 29.85 0.13 -5.26 16 13 C 0.26 10.24 3.55 71.98 0.26 10.50 16 14 O -0.39 -16.69 10.65 -121.10 -1.29 -17.98 16 15 C 0.00 0.01 7.95 72.63 0.58 0.59 16 16 C 0.02 0.48 8.07 72.63 0.59 1.06 16 17 O -0.40 -12.59 11.22 -126.20 -1.42 -14.01 16 18 C 0.04 1.64 5.88 44.99 0.26 1.90 16 19 C -0.17 -5.94 9.79 30.59 0.30 -5.64 16 20 C -0.18 -5.70 10.36 30.59 0.32 -5.38 16 21 H 0.26 15.72 8.32 -92.71 -0.77 14.95 16 22 H 0.12 4.10 8.11 -2.39 -0.02 4.08 16 23 H 0.09 3.52 7.56 -2.38 -0.02 3.50 16 24 H 0.07 2.94 7.94 -2.38 -0.02 2.92 16 25 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.12 4.25 6.95 -2.39 -0.02 4.23 16 30 H 0.08 3.25 6.68 -2.39 -0.02 3.23 16 31 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -78.41 279.31 3.13 -75.28 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.10 Total: 17.40 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 4.08 Total: 5.28 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.49 Total: -79.21 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -2.58 Total: -67.98 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -78.41 3.13 -75.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793185605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.306 kcal (2) G-P(sol) polarization free energy of solvation -78.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds