Wall clock time and date at job start Thu Apr 9 2020 12:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00000 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00254 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.40307 * 29.99141 * 14 13 11 16 16 C 1.53066 * 109.40465 * 149.82708 * 14 13 11 17 17 C 1.53342 * 108.42766 * 169.02961 * 16 14 13 18 18 C 1.52927 * 108.67161 * 292.46525 * 17 16 14 19 19 N 1.45751 * 110.48840 * 50.75434 * 18 17 16 20 20 C 1.33240 * 124.06581 * 340.84532 * 19 18 17 21 21 O 1.21286 * 118.15269 * 182.29050 * 20 19 18 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.09000 * 109.67056 * 288.76088 * 16 14 13 28 28 H 1.08995 * 109.67570 * 49.28655 * 16 14 13 29 29 H 1.08994 * 109.60676 * 52.21815 * 17 16 14 30 30 H 1.09000 * 109.60500 * 172.71463 * 17 16 14 31 31 H 1.08995 * 109.29801 * 171.06659 * 18 17 16 32 32 H 1.08996 * 109.29691 * 290.44287 * 18 17 16 33 33 H 0.96996 * 117.95122 * 160.92696 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 8 0.2837 -4.9672 0.0020 13 8 2.1631 -6.1296 0.0018 14 6 1.3724 -7.3474 0.0018 15 1 0.4286 -7.1663 -0.5126 16 6 2.1425 -8.4538 -0.7232 17 6 1.4252 -9.7863 -0.4750 18 6 1.5621 -10.1479 1.0045 19 7 1.1649 -9.0240 1.8433 20 6 1.0966 -7.7631 1.4183 21 8 0.7936 -6.9047 2.2198 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 2.1669 -8.2438 -1.7925 28 1 3.1600 -8.5071 -0.3359 29 1 0.3704 -9.6870 -0.7311 30 1 1.8805 -10.5660 -1.0857 31 1 0.9266 -11.0052 1.2261 32 1 2.5991 -10.4075 1.2174 33 1 0.9372 -9.2054 2.7685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:43 Heat of formation + Delta-G solvation = -137.375349 kcal Electronic energy + Delta-G solvation = -17219.483015 eV Core-core repulsion = 14244.752958 eV Total energy + Delta-G solvation = -2974.730057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.86012 -39.26361 -36.69166 -36.02958 -33.52150 -32.67731 -31.07628 -29.43713 -26.07335 -24.51874 -23.13115 -22.04825 -19.81325 -19.52974 -17.66320 -17.30453 -16.89014 -16.34094 -15.55352 -15.09543 -15.03025 -14.42118 -14.31038 -14.07230 -13.78445 -13.10868 -12.72173 -12.25805 -11.96617 -11.88137 -11.65044 -11.26563 -11.09571 -11.03908 -10.90984 -10.57571 -9.99204 -9.85019 -9.60317 -9.49698 -9.28796 -9.10408 -8.32616 -5.96125 -4.00793 2.34042 2.82709 3.08699 3.27829 3.34596 3.41748 3.45749 4.29887 4.34229 4.41386 4.46848 4.52325 4.92230 5.01665 5.16336 5.34465 5.38807 5.39215 5.58461 5.60457 5.84945 6.19034 6.25911 6.58603 6.67647 6.98188 7.07806 7.72888 7.81423 8.04492 8.08143 8.31573 8.47504 9.06577 9.62860 11.15055 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.060568 B = 0.004417 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.176583 B = 6337.463064 C = 6467.218980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.100 4.100 11 C 0.459 3.541 12 O -0.493 6.493 13 O -0.345 6.345 14 C 0.075 3.925 15 H 0.114 0.886 16 C -0.119 4.119 17 C -0.135 4.135 18 C 0.108 3.892 19 N -0.720 5.720 20 C 0.503 3.497 21 O -0.525 6.525 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 -22.740 -1.512 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.302 3.698 12 O -0.377 6.377 13 O -0.263 6.263 14 C 0.016 3.984 15 H 0.132 0.868 16 C -0.157 4.157 17 C -0.173 4.173 18 C -0.016 4.016 19 N -0.376 5.376 20 C 0.288 3.712 21 O -0.400 6.400 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.652 -22.111 -1.339 22.634 hybrid contribution 0.160 0.637 0.400 0.769 sum 4.812 -21.474 -0.939 22.026 Atomic orbital electron populations 1.70013 1.06093 1.26582 1.50108 1.25025 0.94848 0.99315 0.95179 0.86484 0.80019 0.83591 0.77576 1.19650 1.20993 1.20984 1.21197 0.93102 0.90632 1.51553 0.92248 1.19036 0.93258 0.89210 0.98987 1.21758 1.00660 0.87360 1.03932 1.24818 0.88176 0.85449 0.71380 1.90626 1.15759 1.87020 1.44323 1.86699 1.40739 1.14006 1.84852 1.22326 0.98217 0.84892 0.92970 0.86840 1.21751 1.00311 0.91882 1.01729 1.21884 1.02282 0.97492 0.95609 1.21421 1.00778 0.88626 0.90805 1.45438 1.70068 1.06804 1.15249 1.20442 0.77175 0.82484 0.91087 1.90849 1.45990 1.48684 1.54508 0.92941 0.95582 0.95421 0.88970 0.88925 0.89425 0.89684 0.90468 0.88719 0.90316 0.91362 0.76351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 11 C 0.46 9.91 7.41 36.01 0.27 10.17 16 12 O -0.49 -12.19 15.02 -18.90 -0.28 -12.47 16 13 O -0.35 -6.18 9.76 -45.00 -0.44 -6.62 16 14 C 0.07 1.08 2.70 -28.10 -0.08 1.01 16 15 H 0.11 1.73 7.15 -51.93 -0.37 1.36 16 16 C -0.12 -1.06 5.69 -26.52 -0.15 -1.21 16 17 C -0.13 -0.79 6.02 -26.59 -0.16 -0.95 16 18 C 0.11 0.63 7.17 -4.48 -0.03 0.60 16 19 N -0.72 -7.35 5.44 -61.42 -0.33 -7.69 16 20 C 0.50 7.76 7.46 -11.92 -0.09 7.67 16 21 O -0.53 -11.00 16.88 -10.97 -0.19 -11.19 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 24 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 25 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 26 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 3.66 8.80 -40.82 -0.36 3.30 16 LS Contribution 285.58 15.07 4.30 4.30 Total: -1.00 -37.24 285.58 -6.65 -43.89 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.49 Total: -1.94 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.93 Total: 1.81 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.40 Total: -34.70 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.91 Total: -30.28 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -37.24 -6.65 -43.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.487 kcal (2) G-P(sol) polarization free energy of solvation -37.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds