Wall clock time and date at job start Thu Apr 9 2020 12:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00000 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00254 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.40307 * 29.99141 * 14 13 11 16 16 C 1.53066 * 109.40465 * 149.82708 * 14 13 11 17 17 C 1.53342 * 108.42766 * 169.02961 * 16 14 13 18 18 C 1.52927 * 108.67161 * 292.46525 * 17 16 14 19 19 N 1.45751 * 110.48840 * 50.75434 * 18 17 16 20 20 C 1.33240 * 124.06581 * 340.84532 * 19 18 17 21 21 O 1.21286 * 118.15269 * 182.29050 * 20 19 18 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.09000 * 109.67056 * 288.76088 * 16 14 13 28 28 H 1.08995 * 109.67570 * 49.28655 * 16 14 13 29 29 H 1.08994 * 109.60676 * 52.21815 * 17 16 14 30 30 H 1.09000 * 109.60500 * 172.71463 * 17 16 14 31 31 H 1.08995 * 109.29801 * 171.06659 * 18 17 16 32 32 H 1.08996 * 109.29691 * 290.44287 * 18 17 16 33 33 H 0.96996 * 117.95122 * 160.92696 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 8 0.2837 -4.9672 0.0020 13 8 2.1631 -6.1296 0.0018 14 6 1.3724 -7.3474 0.0018 15 1 0.4286 -7.1663 -0.5126 16 6 2.1425 -8.4538 -0.7232 17 6 1.4252 -9.7863 -0.4750 18 6 1.5621 -10.1479 1.0045 19 7 1.1649 -9.0240 1.8433 20 6 1.0966 -7.7631 1.4183 21 8 0.7936 -6.9047 2.2198 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 2.1669 -8.2438 -1.7925 28 1 3.1600 -8.5071 -0.3359 29 1 0.3704 -9.6870 -0.7311 30 1 1.8805 -10.5660 -1.0857 31 1 0.9266 -11.0052 1.2261 32 1 2.5991 -10.4075 1.2174 33 1 0.9372 -9.2054 2.7685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:42 Heat of formation + Delta-G solvation = -164.806449 kcal Electronic energy + Delta-G solvation = -17220.672517 eV Core-core repulsion = 14244.752958 eV Total energy + Delta-G solvation = -2975.919559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.15755 -40.69160 -37.84388 -37.42225 -35.67303 -33.67673 -33.05777 -30.41611 -28.05247 -25.53030 -24.41179 -23.56399 -21.56086 -20.42857 -19.24417 -18.57352 -18.19264 -18.06384 -17.08420 -16.57554 -16.49891 -16.06293 -15.34386 -15.08650 -14.72154 -14.48858 -14.35288 -14.24749 -13.31251 -13.11108 -12.85660 -12.77034 -12.52600 -12.45676 -12.26921 -12.04327 -11.95888 -11.76027 -11.44826 -11.25652 -10.81230 -10.60090 -10.16175 -8.20884 -6.35558 1.05358 1.24016 1.42724 1.44642 1.58261 1.82073 2.18002 2.42995 3.12676 3.36874 3.54597 3.66121 3.81687 3.96216 4.15761 4.40234 4.41732 4.48449 4.69684 4.72825 4.87344 4.98086 5.00893 5.19540 5.35569 5.44500 5.51536 5.73290 5.78585 6.10565 6.11773 6.73224 6.83374 7.02420 7.34837 8.92475 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.060568 B = 0.004417 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.176583 B = 6337.463064 C = 6467.218980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.979 3.021 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.039 3.961 10 C -0.092 4.092 11 C 0.464 3.536 12 O -0.536 6.536 13 O -0.338 6.338 14 C 0.063 3.937 15 H 0.099 0.901 16 C -0.111 4.111 17 C -0.130 4.130 18 C 0.097 3.903 19 N -0.701 5.701 20 C 0.495 3.505 21 O -0.597 6.597 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.018 1.018 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.817 -24.605 -2.285 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.802 3.198 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.129 4.129 11 C 0.309 3.691 12 O -0.424 6.424 13 O -0.254 6.254 14 C 0.005 3.995 15 H 0.117 0.883 16 C -0.149 4.149 17 C -0.167 4.167 18 C -0.025 4.025 19 N -0.354 5.354 20 C 0.281 3.719 21 O -0.478 6.478 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.000 1.000 25 H 0.142 0.858 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 7.222 -24.082 -2.129 25.232 hybrid contribution -0.652 1.012 0.641 1.364 sum 6.570 -23.070 -1.487 24.033 Atomic orbital electron populations 1.70186 1.08377 1.27943 1.51225 1.26161 0.95761 1.04058 0.94361 0.85196 0.79263 0.77686 0.77622 1.17535 1.20278 1.20710 1.21666 0.94159 0.91131 1.51235 0.90258 1.18801 0.93664 0.92109 0.95272 1.21526 0.99354 0.85815 1.06187 1.24612 0.87411 0.86625 0.70460 1.90609 1.17531 1.87844 1.46398 1.86625 1.40565 1.14189 1.84025 1.22865 0.98573 0.84687 0.93363 0.88319 1.21890 1.00224 0.91052 1.01721 1.21983 1.02095 0.96493 0.96150 1.21901 1.02922 0.87531 0.90159 1.45475 1.67482 1.06188 1.16209 1.20680 0.76779 0.83547 0.90917 1.90818 1.49692 1.51109 1.56187 0.92711 0.98832 0.99963 0.85756 0.87346 0.88045 0.88702 0.90847 0.84686 0.87032 0.88951 0.75688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.42 13.29 21.45 0.28 -60.14 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 3 Si 0.98 45.06 29.54 68.60 2.03 47.08 16 4 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 8 H 0.08 4.22 7.74 -2.91 -0.02 4.20 16 9 C 0.04 2.25 4.26 29.85 0.13 2.38 16 10 C -0.09 -4.07 5.75 29.85 0.17 -3.90 16 11 C 0.46 20.75 7.41 71.24 0.53 21.28 16 12 O -0.54 -28.20 15.02 22.10 0.33 -27.86 16 13 O -0.34 -12.13 9.76 -45.94 -0.45 -12.58 16 14 C 0.06 1.83 2.70 29.71 0.08 1.91 16 15 H 0.10 3.14 7.15 -2.39 -0.02 3.12 16 16 C -0.11 -1.67 5.69 30.73 0.17 -1.50 16 17 C -0.13 -0.98 6.02 30.68 0.18 -0.80 16 18 C 0.10 0.74 7.17 86.50 0.62 1.36 16 19 N -0.70 -13.15 5.44 -467.47 -2.54 -15.70 16 20 C 0.50 15.41 7.46 87.73 0.65 16.07 16 21 O -0.60 -26.30 16.88 12.75 0.22 -26.08 16 22 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 23 H -0.01 -0.43 8.10 -2.39 -0.02 -0.45 16 24 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 25 H 0.12 4.70 8.14 -2.39 -0.02 4.68 16 26 H 0.11 4.48 8.14 -2.39 -0.02 4.46 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.41 6.92 8.80 -92.71 -0.82 6.10 16 Total: -1.00 -87.24 285.58 3.40 -83.83 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.30 Total: 6.10 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 3.24 Total: 5.34 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -2.26 Total: -75.83 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: 0.10 Total: -66.52 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -87.24 3.40 -83.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.973 kcal (2) G-P(sol) polarization free energy of solvation -87.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds