Wall clock time and date at job start Thu Apr 9 2020 12:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48500 * 109.47407 * 270.00480 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00496 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00242 * 3 2 1 7 7 C 1.37874 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47581 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47581 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99595 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00077 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47021 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00041 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00169 * 180.02562 * 17 15 14 19 19 C 1.52992 * 117.49908 * 223.61922 * 18 17 15 20 20 C 1.52994 * 117.50047 * 154.99430 * 18 17 15 21 21 H 0.97002 * 119.99990 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47017 * 59.99790 * 9 7 2 23 23 H 1.09000 * 109.47368 * 300.00765 * 9 7 2 24 24 H 1.09009 * 109.46302 * 60.00405 * 10 9 7 25 25 H 1.08995 * 109.47159 * 300.00733 * 10 9 7 26 26 H 1.09000 * 109.47070 * 300.00162 * 14 13 11 27 27 H 1.09001 * 109.46626 * 60.00180 * 14 13 11 28 28 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 29 29 H 1.09005 * 115.54704 * 9.32743 * 18 17 15 30 30 H 1.08998 * 117.50095 * 359.97438 * 19 18 17 31 31 H 1.09007 * 117.49624 * 145.02066 * 19 18 17 32 32 H 1.08996 * 117.50255 * 214.98052 * 20 18 17 33 33 H 1.09007 * 117.49803 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5284 -2.6366 -0.0009 12 8 6.1326 -1.5901 -0.0005 13 8 6.1996 -3.7990 -0.0014 14 6 7.6496 -3.7230 -0.0007 15 6 8.2256 -5.1156 -0.0019 16 8 7.4868 -6.0774 -0.0027 17 7 9.5618 -5.2922 -0.0010 18 6 10.1217 -6.6460 -0.0028 19 6 11.2988 -6.9248 0.9340 20 6 11.5288 -6.8278 -0.5755 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8745 -0.6800 -0.8910 24 1 3.6578 -3.1505 -0.8909 25 1 3.6584 -3.1502 0.8891 26 1 7.9860 -3.1903 -0.8902 27 1 7.9851 -3.1914 0.8898 28 1 10.1526 -4.5230 0.0000 29 1 9.4048 -7.4510 -0.1642 30 1 11.6569 -6.1009 1.5513 31 1 11.3564 -7.9135 1.3893 32 1 11.7377 -7.7525 -1.1133 33 1 12.0377 -5.9401 -0.9515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:44 Heat of formation + Delta-G solvation = -127.018841 kcal Electronic energy + Delta-G solvation = -16345.985550 eV Core-core repulsion = 13371.704585 eV Total energy + Delta-G solvation = -2974.280965 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75339 -40.70285 -38.21743 -37.46845 -35.63310 -34.10354 -33.45181 -30.13515 -28.07292 -24.04202 -23.27638 -22.96847 -21.86507 -21.47592 -19.43616 -18.50364 -18.43201 -17.94062 -17.57454 -16.63071 -16.31987 -16.23825 -15.48447 -15.08864 -15.04659 -14.73536 -13.92015 -13.88360 -13.70775 -13.30444 -12.92070 -12.56236 -12.38050 -12.25416 -12.02934 -11.90507 -11.78220 -11.56064 -11.50599 -11.41868 -11.08801 -10.77951 -9.85875 -8.30650 -6.35595 1.13803 1.18488 1.31398 1.36734 1.38459 1.52109 2.24860 2.36076 2.95604 3.04664 3.47074 3.77528 3.85308 3.99013 4.05202 4.05958 4.07366 4.32710 4.38335 4.74436 4.77098 4.82188 5.02173 5.17731 5.20786 5.30014 5.37088 5.40841 5.58822 6.22027 6.30991 6.66522 6.75332 7.03137 7.29473 8.85131 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.072852 B = 0.003550 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.249031 B = 7885.370251 C = 8175.197830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.534 4.534 8 H 0.048 0.952 9 C 0.003 3.997 10 C -0.093 4.093 11 C 0.475 3.525 12 O -0.531 6.531 13 O -0.348 6.348 14 C 0.040 3.960 15 C 0.522 3.478 16 O -0.564 6.564 17 N -0.682 5.682 18 C 0.048 3.952 19 C -0.183 4.183 20 C -0.169 4.169 21 H 0.268 0.732 22 H 0.021 0.979 23 H 0.020 0.980 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.421 0.579 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.500 -10.405 0.068 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.572 4.572 8 H 0.066 0.934 9 C -0.034 4.034 10 C -0.130 4.130 11 C 0.319 3.681 12 O -0.420 6.420 13 O -0.264 6.264 14 C -0.036 4.036 15 C 0.308 3.692 16 O -0.442 6.442 17 N -0.335 5.335 18 C -0.058 4.058 19 C -0.221 4.221 20 C -0.207 4.207 21 H 0.077 0.923 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.259 0.741 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 26.025 -10.678 0.067 28.131 hybrid contribution 0.114 1.107 -0.001 1.113 sum 26.139 -9.571 0.066 27.836 Atomic orbital electron populations 1.70034 1.08020 1.28261 1.52146 1.25864 0.95550 1.03156 0.94041 0.85751 0.79371 0.78866 0.79277 1.19166 1.20601 1.17756 1.21351 0.91065 0.93852 1.50943 0.93414 1.19327 0.94229 0.92414 0.97438 1.21355 0.84411 1.00916 1.06365 1.24310 0.92227 0.80708 0.70805 1.90614 1.70830 1.33681 1.46866 1.86596 1.20810 1.34818 1.84143 1.22889 0.78430 0.95158 1.07172 1.20251 0.82996 0.90228 0.75702 1.90744 1.60133 1.43402 1.49945 1.45035 1.05279 1.09047 1.74120 1.21675 0.91169 0.85329 1.07613 1.23526 1.00359 1.04546 0.93657 1.23492 0.95792 1.05089 0.96330 0.92296 0.96025 0.96135 0.87024 0.87053 0.85987 0.86017 0.74110 0.86537 0.87361 0.87284 0.86857 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 2 C 0.01 0.68 5.47 84.65 0.46 1.14 16 3 Si 0.94 45.14 27.47 68.60 1.88 47.02 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 7 C -0.53 -30.50 9.66 25.60 0.25 -30.26 16 8 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 9 C 0.00 0.17 3.33 29.85 0.10 0.27 16 10 C -0.09 -3.60 5.75 29.85 0.17 -3.43 16 11 C 0.47 16.88 7.96 71.23 0.57 17.45 16 12 O -0.53 -20.58 15.73 21.94 0.35 -20.24 16 13 O -0.35 -11.07 9.75 -45.00 -0.44 -11.51 16 14 C 0.04 0.90 5.94 71.24 0.42 1.32 16 15 C 0.52 12.16 7.91 87.66 0.69 12.85 16 16 O -0.56 -18.87 16.07 15.76 0.25 -18.62 16 17 N -0.68 -9.97 5.57 -442.54 -2.46 -12.44 16 18 C 0.05 0.68 6.43 44.99 0.29 0.97 16 19 C -0.18 -1.65 10.46 30.59 0.32 -1.33 16 20 C -0.17 -1.34 10.45 30.59 0.32 -1.02 16 21 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 22 H 0.02 1.05 7.16 -2.38 -0.02 1.03 16 23 H 0.02 0.98 7.53 -2.39 -0.02 0.96 16 24 H 0.11 4.07 8.14 -2.38 -0.02 4.05 16 25 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 26 H 0.12 2.20 8.13 -2.39 -0.02 2.18 16 27 H 0.12 2.20 8.13 -2.39 -0.02 2.18 16 28 H 0.42 3.11 8.83 -92.71 -0.82 2.29 16 29 H 0.12 2.23 7.40 -2.38 -0.02 2.21 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -75.50 295.00 3.72 -71.78 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 0.24 Total: 4.61 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 3.59 Total: -2.03 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -2.16 Total: -71.02 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: 0.16 Total: -50.36 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -75.50 3.72 -71.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.235 kcal (2) G-P(sol) polarization free energy of solvation -75.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds