Wall clock time and date at job start Thu Apr 9 2020 12:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99939 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00046 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00018 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.60522 * 329.67791 * 14 13 11 16 16 C 1.53347 * 109.60428 * 209.18648 * 14 13 11 17 17 C 1.53064 * 108.43795 * 172.72607 * 16 14 13 18 18 C 1.50171 * 109.89346 * 48.89037 * 17 16 14 19 19 O 1.21278 * 118.25010 * 162.43890 * 18 17 16 20 20 N 1.33366 * 123.50828 * 342.41617 * 18 17 16 21 21 C 1.45752 * 124.10412 * 2.24306 * 20 18 17 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08994 * 109.67514 * 292.44976 * 16 14 13 28 28 H 1.09000 * 109.67260 * 52.98272 * 16 14 13 29 29 H 1.09001 * 109.40354 * 288.76084 * 17 16 14 30 30 H 1.09000 * 109.39599 * 169.01910 * 17 16 14 31 31 H 0.96996 * 117.94578 * 182.22743 * 20 18 17 32 32 H 1.09002 * 109.30158 * 220.58994 * 21 20 18 33 33 H 1.08997 * 109.13410 * 101.10906 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2833 -4.9671 0.0011 13 8 2.1627 -6.1297 0.0008 14 6 1.3718 -7.3473 0.0008 15 1 0.4295 -7.1714 0.5196 16 6 2.1495 -8.4659 0.7049 17 6 1.2269 -9.6783 0.8522 18 6 0.5650 -9.9795 -0.4617 19 8 0.0658 -11.0740 -0.6154 20 7 0.4965 -9.1075 -1.4685 21 6 1.0919 -7.7775 -1.4397 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 3.0206 -8.7383 0.1091 28 1 2.4696 -8.1264 1.6899 29 1 0.4643 -9.4641 1.6010 30 1 1.8116 -10.5417 1.1694 31 1 0.0209 -9.3754 -2.2703 32 1 0.4072 -7.0661 -1.9015 33 1 2.0271 -7.7925 -1.9993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813097671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:48 Heat of formation + Delta-G solvation = -142.588752 kcal Electronic energy + Delta-G solvation = -16938.896523 eV Core-core repulsion = 13963.940395 eV Total energy + Delta-G solvation = -2974.956127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81537 -39.80585 -37.05245 -35.47397 -33.66169 -33.17878 -31.24798 -29.30025 -26.14644 -24.90490 -23.14258 -22.00461 -19.97051 -19.59445 -17.87647 -17.27625 -16.64084 -16.36919 -15.70666 -15.64257 -15.17668 -14.51233 -14.34418 -14.26638 -13.69163 -13.22625 -12.97868 -12.44721 -12.21235 -12.01540 -11.78527 -11.34832 -11.16298 -11.00897 -10.68774 -10.63803 -10.13340 -10.05729 -9.98724 -9.64139 -9.36739 -9.24340 -8.43220 -6.07041 -4.12321 2.37571 2.62759 2.69519 3.13375 3.27997 3.34721 3.37265 4.27773 4.31433 4.35808 4.39869 4.63854 4.83979 5.01395 5.21750 5.28663 5.29731 5.41590 5.52669 5.64122 5.76980 6.02133 6.09717 6.46202 6.51119 6.79199 7.02104 7.59544 7.65235 7.91393 7.92180 8.12883 8.30222 8.94711 9.52284 11.03891 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.070158 B = 0.003933 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.005812 B = 7117.612870 C = 7264.164853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.455 3.545 12 O -0.501 6.501 13 O -0.353 6.353 14 C 0.070 3.930 15 H 0.094 0.906 16 C -0.120 4.120 17 C -0.132 4.132 18 C 0.518 3.482 19 O -0.559 6.559 20 N -0.712 5.712 21 C 0.093 3.907 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.404 0.596 32 H 0.087 0.913 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 -15.602 -0.288 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.299 3.701 12 O -0.387 6.387 13 O -0.270 6.270 14 C 0.014 3.986 15 H 0.112 0.888 16 C -0.158 4.158 17 C -0.172 4.172 18 C 0.305 3.695 19 O -0.438 6.438 20 N -0.365 5.365 21 C -0.032 4.032 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.240 0.760 32 H 0.106 0.894 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.680 -15.987 -0.145 16.658 hybrid contribution 0.090 0.960 -0.398 1.043 sum 4.770 -15.027 -0.543 15.775 Atomic orbital electron populations 1.69991 1.06113 1.26840 1.49798 1.25020 0.94856 0.99370 0.95038 0.86537 0.79771 0.83183 0.78160 1.20582 1.21169 1.19760 1.21141 0.93083 0.90601 1.51998 0.92272 1.19029 0.93220 0.89293 0.98923 1.21797 1.00710 0.87365 1.04162 1.24943 0.88093 0.85754 0.71347 1.90647 1.15839 1.87334 1.44868 1.86683 1.41270 1.14341 1.84691 1.22721 0.96551 0.83536 0.95767 0.88797 1.21744 0.98578 0.92640 1.02800 1.21632 1.00429 0.99977 0.95163 1.20241 0.79384 0.83861 0.86013 1.90765 1.48114 1.22717 1.82214 1.45341 1.56910 1.15383 1.18908 1.21762 0.99947 0.83842 0.97663 0.92798 0.95590 0.95556 0.88793 0.88781 0.89875 0.89096 0.87656 0.87139 0.76042 0.89449 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.82 4.26 -27.89 -0.12 0.70 16 10 C -0.10 -1.94 5.75 -27.88 -0.16 -2.10 16 11 C 0.46 8.06 7.93 36.01 0.29 8.35 16 12 O -0.50 -10.42 15.21 -18.75 -0.29 -10.70 16 13 O -0.35 -4.97 9.89 -39.26 -0.39 -5.35 16 14 C 0.07 0.81 2.52 -26.59 -0.07 0.75 16 15 H 0.09 1.23 7.16 -51.93 -0.37 0.85 16 16 C -0.12 -1.03 5.70 -26.52 -0.15 -1.18 16 17 C -0.13 -1.12 6.03 -28.11 -0.17 -1.29 16 18 C 0.52 5.96 7.71 -11.87 -0.09 5.87 16 19 O -0.56 -8.53 17.78 5.56 0.10 -8.43 16 20 N -0.71 -7.18 5.45 -61.39 -0.33 -7.52 16 21 C 0.09 0.95 6.81 -4.48 -0.03 0.92 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 24 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 25 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 26 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 27 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.40 3.63 8.80 -40.82 -0.36 3.27 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 287.11 15.07 4.33 4.33 Total: -1.00 -33.02 287.11 -6.28 -39.30 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.49 Total: -0.79 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.91 Total: -1.07 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.40 Total: -33.18 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.57 Total: -24.49 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.02 -6.28 -39.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813097671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.291 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds