Wall clock time and date at job start Thu Apr 9 2020 12:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99939 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00046 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00018 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.60522 * 329.67791 * 14 13 11 16 16 C 1.53347 * 109.60428 * 209.18648 * 14 13 11 17 17 C 1.53064 * 108.43795 * 172.72607 * 16 14 13 18 18 C 1.50171 * 109.89346 * 48.89037 * 17 16 14 19 19 O 1.21278 * 118.25010 * 162.43890 * 18 17 16 20 20 N 1.33366 * 123.50828 * 342.41617 * 18 17 16 21 21 C 1.45752 * 124.10412 * 2.24306 * 20 18 17 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08994 * 109.67514 * 292.44976 * 16 14 13 28 28 H 1.09000 * 109.67260 * 52.98272 * 16 14 13 29 29 H 1.09001 * 109.40354 * 288.76084 * 17 16 14 30 30 H 1.09000 * 109.39599 * 169.01910 * 17 16 14 31 31 H 0.96996 * 117.94578 * 182.22743 * 20 18 17 32 32 H 1.09002 * 109.30158 * 220.58994 * 21 20 18 33 33 H 1.08997 * 109.13410 * 101.10906 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2833 -4.9671 0.0011 13 8 2.1627 -6.1297 0.0008 14 6 1.3718 -7.3473 0.0008 15 1 0.4295 -7.1714 0.5196 16 6 2.1495 -8.4659 0.7049 17 6 1.2269 -9.6783 0.8522 18 6 0.5650 -9.9795 -0.4617 19 8 0.0658 -11.0740 -0.6154 20 7 0.4965 -9.1075 -1.4685 21 6 1.0919 -7.7775 -1.4397 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 3.0206 -8.7383 0.1091 28 1 2.4696 -8.1264 1.6899 29 1 0.4643 -9.4641 1.6010 30 1 1.8116 -10.5417 1.1694 31 1 0.0209 -9.3754 -2.2703 32 1 0.4072 -7.0661 -1.9015 33 1 2.0271 -7.7925 -1.9993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813097671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:48 Heat of formation + Delta-G solvation = -165.586136 kcal Electronic energy + Delta-G solvation = -16939.893764 eV Core-core repulsion = 13963.940395 eV Total energy + Delta-G solvation = -2975.953368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91748 -40.95777 -38.25114 -36.59525 -35.62953 -33.98066 -33.10770 -30.29728 -27.97091 -25.79728 -24.46895 -23.36471 -21.47386 -20.46871 -19.20954 -18.57410 -17.96729 -17.68448 -16.98514 -16.77264 -16.49207 -16.24827 -15.36303 -15.17719 -14.67740 -14.44939 -14.39109 -14.24230 -13.29062 -13.22354 -13.15192 -12.81290 -12.65653 -12.49050 -12.00214 -11.96672 -11.79348 -11.69379 -11.39083 -11.22834 -10.92442 -10.56071 -10.26489 -8.18747 -6.32057 1.22790 1.44125 1.46903 1.47956 1.53873 1.58759 2.23807 2.44595 3.15698 3.40803 3.46292 3.55695 3.78065 3.89545 4.22175 4.32779 4.44305 4.46097 4.49516 4.62008 4.77491 4.92309 4.92963 5.05374 5.38854 5.50050 5.58229 5.64262 5.82817 6.14596 6.16195 6.79241 6.88235 7.04569 7.38528 8.93713 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.070158 B = 0.003933 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.005812 B = 7117.612870 C = 7264.164853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.036 3.964 10 C -0.094 4.094 11 C 0.466 3.534 12 O -0.540 6.540 13 O -0.337 6.337 14 C 0.062 3.938 15 H 0.077 0.923 16 C -0.109 4.109 17 C -0.126 4.126 18 C 0.513 3.487 19 O -0.601 6.601 20 N -0.706 5.706 21 C 0.097 3.903 22 H 0.263 0.737 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.408 0.592 32 H 0.076 0.924 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -15.856 -0.050 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.001 4.001 10 C -0.132 4.132 11 C 0.311 3.689 12 O -0.429 6.429 13 O -0.253 6.253 14 C 0.006 3.994 15 H 0.095 0.905 16 C -0.147 4.147 17 C -0.165 4.165 18 C 0.301 3.699 19 O -0.484 6.484 20 N -0.358 5.358 21 C -0.028 4.028 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.244 0.756 32 H 0.094 0.906 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.284 -16.249 0.084 17.807 hybrid contribution -0.734 0.967 -0.490 1.309 sum 6.549 -15.283 -0.407 16.632 Atomic orbital electron populations 1.70157 1.08214 1.27863 1.51382 1.26070 0.95675 1.03787 0.94604 0.85348 0.78730 0.77873 0.78481 1.19803 1.21394 1.17891 1.21663 0.94164 0.91316 1.50915 0.90346 1.18812 0.93760 0.92021 0.95493 1.21524 0.99278 0.85860 1.06492 1.24556 0.87231 0.86604 0.70500 1.90650 1.17476 1.88004 1.46782 1.86629 1.40667 1.14075 1.83902 1.23036 0.96332 0.83110 0.96921 0.90509 1.21745 0.98458 0.91034 1.03435 1.21673 1.00704 1.00675 0.93475 1.20806 0.78869 0.83231 0.86944 1.90750 1.50143 1.24445 1.83032 1.45329 1.56411 1.15055 1.18997 1.21724 1.00588 0.83437 0.97003 0.92832 0.99122 0.99200 0.86457 0.86308 0.88294 0.87670 0.86858 0.85053 0.75573 0.90565 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.98 13.29 21.45 0.28 -56.70 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.54 -29.16 9.11 25.60 0.23 -28.92 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.04 1.87 4.26 29.85 0.13 2.00 16 10 C -0.09 -3.44 5.75 29.85 0.17 -3.27 16 11 C 0.47 16.16 7.93 71.24 0.57 16.72 16 12 O -0.54 -22.94 15.21 21.97 0.33 -22.60 16 13 O -0.34 -8.75 9.89 -51.41 -0.51 -9.26 16 14 C 0.06 1.32 2.52 30.69 0.08 1.40 16 15 H 0.08 1.96 7.16 -2.39 -0.02 1.94 16 16 C -0.11 -1.53 5.70 30.73 0.18 -1.36 16 17 C -0.13 -1.83 6.03 29.70 0.18 -1.65 16 18 C 0.51 11.16 7.71 87.71 0.68 11.83 16 19 O -0.60 -18.04 17.78 -3.02 -0.05 -18.09 16 20 N -0.71 -13.46 5.45 -467.31 -2.55 -16.00 16 21 C 0.10 1.84 6.81 86.49 0.59 2.43 16 22 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 23 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 24 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 25 H 0.12 3.75 8.14 -2.39 -0.02 3.74 16 26 H 0.12 3.76 8.14 -2.39 -0.02 3.75 16 27 H 0.10 1.14 8.13 -2.39 -0.02 1.12 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.41 7.09 8.80 -92.71 -0.82 6.27 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.12 287.11 3.09 -70.03 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.30 Total: 8.62 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 3.26 Total: -0.55 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -2.26 Total: -72.70 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.23 Total: -49.95 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.12 3.09 -70.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813097671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.556 kcal (2) G-P(sol) polarization free energy of solvation -73.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds