Wall clock time and date at job start Thu Apr 9 2020 12:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 115.56285 * 2 1 4 4 C 1.53002 * 117.49989 * 145.69252 * 2 1 3 5 5 C 1.52998 * 60.00144 * 107.48993 * 4 2 1 6 6 H 1.09008 * 117.49820 * 252.51225 * 5 4 2 7 7 C 1.50697 * 117.50080 * 107.51584 * 5 4 2 8 8 O 1.21294 * 119.99913 * 291.38936 * 7 5 4 9 9 N 1.34775 * 120.00205 * 111.38911 * 7 5 4 10 10 C 1.37102 * 120.00368 * 180.02562 * 9 7 5 11 11 H 1.07992 * 119.99678 * 16.25449 * 10 9 7 12 12 C 1.38946 * 119.99883 * 196.25632 * 10 9 7 13 13 N 1.31407 * 120.00400 * 21.13166 * 12 10 9 14 14 Si 1.86799 * 119.99836 * 201.12935 * 12 10 9 15 15 H 1.48502 * 109.46925 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47196 * 120.00108 * 14 12 10 17 17 H 1.48496 * 109.47511 * 240.00542 * 14 12 10 18 18 C 1.46505 * 120.00001 * 0.02562 * 9 7 5 19 19 C 1.50696 * 109.46935 * 84.14981 * 18 9 7 20 20 O 1.20830 * 120.00434 * 0.02562 * 19 18 9 21 21 O 1.34237 * 120.00233 * 180.02562 * 19 18 9 22 22 H 1.09007 * 109.47156 * 325.70249 * 1 2 3 23 23 H 1.09009 * 109.47424 * 85.69869 * 1 2 3 24 24 H 1.08996 * 109.47580 * 205.70330 * 1 2 3 25 25 H 1.09005 * 109.46850 * 154.30000 * 3 2 1 26 26 H 1.08996 * 109.47098 * 274.29527 * 3 2 1 27 27 H 1.08996 * 109.46800 * 34.29972 * 3 2 1 28 28 H 1.09000 * 117.49794 * 359.97438 * 4 2 1 29 29 H 1.09000 * 117.49637 * 214.98054 * 4 2 1 30 30 H 0.96998 * 120.00141 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47334 * 204.15270 * 18 9 7 32 32 H 1.09003 * 109.47214 * 324.15431 * 18 9 7 33 33 H 0.96702 * 117.00229 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 1.6111 -1.8585 -1.2684 7 6 3.5293 -0.7817 -1.4609 8 8 3.9725 0.3459 -1.4011 9 7 4.1932 -1.7310 -2.1497 10 6 5.3698 -1.4224 -2.7823 11 1 5.9003 -0.5178 -2.5246 12 6 5.8795 -2.2736 -3.7551 13 7 5.0850 -3.1230 -4.3667 14 14 7.6942 -2.2105 -4.1934 15 1 8.3674 -1.1765 -3.3670 16 1 8.3134 -3.5343 -3.9301 17 1 7.8447 -1.8708 -5.6311 18 6 3.6577 -3.0927 -2.2224 19 6 2.6430 -3.1747 -3.3335 20 8 2.3931 -2.1962 -3.9970 21 8 2.0167 -4.3347 -3.5863 22 1 -0.3634 0.8490 0.5791 23 1 -0.3634 0.0771 -1.0248 24 1 -0.3634 -0.9259 0.4457 25 1 3.1823 1.3084 0.4457 26 1 2.2775 1.7412 -1.0247 27 1 1.5810 2.0743 0.5791 28 1 1.6112 -1.8583 1.2685 29 1 3.1715 -0.8752 1.2682 30 1 5.4408 -3.7170 -5.0460 31 1 4.4698 -3.7924 -2.4196 32 1 3.1811 -3.3467 -1.2756 33 1 1.3743 -4.3385 -4.3091 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833556615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:21 Heat of formation + Delta-G solvation = -92.252781 kcal Electronic energy + Delta-G solvation = -18288.227243 eV Core-core repulsion = 15315.453847 eV Total energy + Delta-G solvation = -2972.773396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67591 -38.69037 -36.69265 -35.10926 -34.38298 -31.75410 -29.03866 -27.70216 -27.00822 -25.29810 -22.79006 -21.05529 -19.57277 -17.87708 -17.17423 -16.89508 -16.41353 -15.58365 -14.78828 -14.47621 -14.15319 -13.99674 -13.43340 -13.31441 -12.99945 -12.39787 -12.03269 -11.98027 -11.73344 -11.57517 -11.47443 -11.18515 -10.96452 -10.79752 -10.43227 -10.37696 -10.33302 -9.74008 -9.56996 -9.25425 -9.02377 -8.28842 -7.89122 -6.44433 -3.87862 3.11390 3.24416 3.31779 3.40778 3.56642 4.00944 4.15363 4.37771 4.67279 5.02725 5.12762 5.26955 5.36592 5.49012 5.87946 5.92512 5.93752 5.95717 6.05151 6.20373 6.36777 6.41529 6.46805 6.47485 6.61556 6.64930 7.06184 7.49026 7.55192 8.01387 8.38873 9.03473 9.10842 9.33073 9.89084 10.64611 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.009406 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.390221 B = 2976.133748 C = 3738.103474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C -0.095 4.095 4 C -0.157 4.157 5 C -0.170 4.170 6 H 0.103 0.897 7 C 0.491 3.509 8 O -0.569 6.569 9 N -0.431 5.431 10 C -0.302 4.302 11 H 0.108 0.892 12 C 0.027 3.973 13 N -0.883 5.883 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.283 1.283 18 C 0.148 3.852 19 C 0.488 3.512 20 O -0.503 6.503 21 O -0.535 6.535 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.270 0.730 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 -2.680 6.729 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.152 4.152 4 C -0.195 4.195 5 C -0.191 4.191 6 H 0.121 0.879 7 C 0.280 3.720 8 O -0.452 6.452 9 N -0.150 5.150 10 C -0.429 4.429 11 H 0.126 0.874 12 C -0.175 4.175 13 N -0.524 5.524 14 Si 0.755 3.245 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.209 1.209 18 C 0.021 3.979 19 C 0.328 3.672 20 O -0.388 6.388 21 O -0.346 6.346 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.999 -1.957 6.737 9.231 hybrid contribution 0.325 -0.422 -1.227 1.338 sum -5.674 -2.379 5.509 8.259 Atomic orbital electron populations 1.21357 0.92365 1.01456 1.01814 1.21472 0.93961 0.92206 1.02580 1.21270 0.99268 0.92203 1.02494 1.23165 1.02584 1.01318 0.92398 1.22358 0.99066 1.03207 0.94479 0.87860 1.19143 0.84357 0.84777 0.83685 1.90513 1.68715 1.20314 1.65651 1.43410 1.20490 1.06142 1.44981 1.19760 0.95791 1.09430 1.17913 0.87429 1.25228 1.00261 0.97163 0.94878 1.69807 1.34411 1.24067 1.24072 0.85825 0.82228 0.78180 0.78241 1.19179 1.20572 1.20917 1.20677 0.95895 0.88613 0.92683 1.23918 0.78607 0.79457 0.85206 1.90617 1.61761 1.38070 1.48401 1.84532 1.55375 1.39717 1.55009 0.92148 0.92286 0.92724 0.91656 0.91396 0.94382 0.88798 0.88537 0.91991 0.85443 0.90435 0.75255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.85 37.15 0.37 -1.16 16 2 C -0.10 -1.72 2.70 -154.51 -0.42 -2.14 16 3 C -0.10 -1.71 8.09 37.16 0.30 -1.41 16 4 C -0.16 -2.48 9.52 -26.73 -0.25 -2.74 16 5 C -0.17 -3.31 4.53 -91.77 -0.42 -3.72 16 6 H 0.10 1.96 6.73 -51.92 -0.35 1.61 16 7 C 0.49 12.12 7.18 -10.99 -0.08 12.04 16 8 O -0.57 -15.45 12.75 5.55 0.07 -15.38 16 9 N -0.43 -11.01 2.18 -116.10 -0.25 -11.27 16 10 C -0.30 -8.36 9.35 -14.93 -0.14 -8.50 16 11 H 0.11 3.12 7.36 -52.49 -0.39 2.73 16 12 C 0.03 0.70 4.89 -17.47 -0.09 0.62 16 13 N -0.88 -23.38 9.25 55.50 0.51 -22.87 16 14 Si 0.93 20.63 29.60 -169.99 -5.03 15.60 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.15 3.28 4.85 -5.19 -0.03 3.25 16 19 C 0.49 10.99 5.73 36.00 0.21 11.20 16 20 O -0.50 -13.35 16.81 -18.75 -0.32 -13.67 16 21 O -0.54 -9.73 13.42 -39.28 -0.53 -10.26 16 22 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 23 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 24 H 0.05 0.65 7.90 -51.93 -0.41 0.24 16 25 H 0.06 1.26 7.02 -51.93 -0.36 0.89 16 26 H 0.07 1.39 7.26 -51.93 -0.38 1.01 16 27 H 0.04 0.56 7.92 -51.93 -0.41 0.15 16 28 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.10 1.57 8.05 -51.93 -0.42 1.15 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.13 2.92 6.34 -51.93 -0.33 2.59 16 32 H 0.08 1.42 6.98 -51.93 -0.36 1.06 16 33 H 0.39 5.47 9.10 45.56 0.41 5.88 16 LS Contribution 279.12 15.07 4.21 4.21 Total: -1.00 -32.78 279.12 -5.26 -38.04 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -3.38 Total: 8.15 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.54 Total: 7.44 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.26 Total: -34.13 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.77 Total: -39.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.78 -5.26 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833556615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.214 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds