Wall clock time and date at job start Thu Apr 9 2020 12:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 115.56285 * 2 1 4 4 C 1.53002 * 117.49989 * 145.69252 * 2 1 3 5 5 C 1.52998 * 60.00144 * 107.48993 * 4 2 1 6 6 H 1.09008 * 117.49820 * 252.51225 * 5 4 2 7 7 C 1.50697 * 117.50080 * 107.51584 * 5 4 2 8 8 O 1.21294 * 119.99913 * 291.38936 * 7 5 4 9 9 N 1.34775 * 120.00205 * 111.38911 * 7 5 4 10 10 C 1.37102 * 120.00368 * 180.02562 * 9 7 5 11 11 H 1.07992 * 119.99678 * 16.25449 * 10 9 7 12 12 C 1.38946 * 119.99883 * 196.25632 * 10 9 7 13 13 N 1.31407 * 120.00400 * 21.13166 * 12 10 9 14 14 Si 1.86799 * 119.99836 * 201.12935 * 12 10 9 15 15 H 1.48502 * 109.46925 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47196 * 120.00108 * 14 12 10 17 17 H 1.48496 * 109.47511 * 240.00542 * 14 12 10 18 18 C 1.46505 * 120.00001 * 0.02562 * 9 7 5 19 19 C 1.50696 * 109.46935 * 84.14981 * 18 9 7 20 20 O 1.20830 * 120.00434 * 0.02562 * 19 18 9 21 21 O 1.34237 * 120.00233 * 180.02562 * 19 18 9 22 22 H 1.09007 * 109.47156 * 325.70249 * 1 2 3 23 23 H 1.09009 * 109.47424 * 85.69869 * 1 2 3 24 24 H 1.08996 * 109.47580 * 205.70330 * 1 2 3 25 25 H 1.09005 * 109.46850 * 154.30000 * 3 2 1 26 26 H 1.08996 * 109.47098 * 274.29527 * 3 2 1 27 27 H 1.08996 * 109.46800 * 34.29972 * 3 2 1 28 28 H 1.09000 * 117.49794 * 359.97438 * 4 2 1 29 29 H 1.09000 * 117.49637 * 214.98054 * 4 2 1 30 30 H 0.96998 * 120.00141 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47334 * 204.15270 * 18 9 7 32 32 H 1.09003 * 109.47214 * 324.15431 * 18 9 7 33 33 H 0.96702 * 117.00229 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 1.6111 -1.8585 -1.2684 7 6 3.5293 -0.7817 -1.4609 8 8 3.9725 0.3459 -1.4011 9 7 4.1932 -1.7310 -2.1497 10 6 5.3698 -1.4224 -2.7823 11 1 5.9003 -0.5178 -2.5246 12 6 5.8795 -2.2736 -3.7551 13 7 5.0850 -3.1230 -4.3667 14 14 7.6942 -2.2105 -4.1934 15 1 8.3674 -1.1765 -3.3670 16 1 8.3134 -3.5343 -3.9301 17 1 7.8447 -1.8708 -5.6311 18 6 3.6577 -3.0927 -2.2224 19 6 2.6430 -3.1747 -3.3335 20 8 2.3931 -2.1962 -3.9970 21 8 2.0167 -4.3347 -3.5863 22 1 -0.3634 0.8490 0.5791 23 1 -0.3634 0.0771 -1.0248 24 1 -0.3634 -0.9259 0.4457 25 1 3.1823 1.3084 0.4457 26 1 2.2775 1.7412 -1.0247 27 1 1.5810 2.0743 0.5791 28 1 1.6112 -1.8583 1.2685 29 1 3.1715 -0.8752 1.2682 30 1 5.4408 -3.7170 -5.0460 31 1 4.4698 -3.7924 -2.4196 32 1 3.1811 -3.3467 -1.2756 33 1 1.3743 -4.3385 -4.3091 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833556615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:20 Heat of formation + Delta-G solvation = -114.511727 kcal Electronic energy + Delta-G solvation = -18289.192463 eV Core-core repulsion = 15315.453847 eV Total energy + Delta-G solvation = -2973.738616 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41103 -40.36668 -38.29450 -36.85260 -36.27668 -33.74457 -30.39586 -29.51676 -28.27518 -27.16085 -24.43489 -22.77248 -21.08953 -19.44552 -19.04511 -18.67876 -18.18684 -17.35526 -16.56049 -16.23377 -15.88789 -15.61823 -14.91378 -14.86768 -14.46327 -13.92136 -13.70729 -13.54808 -13.40821 -13.34635 -12.79474 -12.68935 -12.59271 -12.42979 -12.17466 -12.12512 -12.03802 -11.54432 -11.06594 -10.94719 -10.63948 -10.13845 -9.85281 -8.44291 -5.95339 1.33247 1.40938 1.55365 1.66551 1.82917 2.24456 2.51352 2.78988 2.92471 3.19796 3.73388 3.79829 3.97181 4.25172 4.30363 4.35367 4.68056 4.75524 4.84060 4.86386 4.92311 5.02904 5.10064 5.12886 5.15592 5.34737 5.44498 5.63008 5.93774 6.02644 6.40673 7.11718 7.31103 7.45930 7.97625 8.62818 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.009406 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.390221 B = 2976.133748 C = 3738.103474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.195 4.195 6 H 0.111 0.889 7 C 0.477 3.523 8 O -0.611 6.611 9 N -0.446 5.446 10 C -0.339 4.339 11 H 0.078 0.922 12 C -0.003 4.003 13 N -0.895 5.895 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.259 1.259 17 H -0.284 1.284 18 C 0.147 3.853 19 C 0.497 3.503 20 O -0.551 6.551 21 O -0.518 6.518 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.274 0.726 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -4.279 7.932 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.149 4.149 4 C -0.163 4.163 5 C -0.216 4.216 6 H 0.129 0.871 7 C 0.269 3.731 8 O -0.497 6.497 9 N -0.165 5.165 10 C -0.467 4.467 11 H 0.096 0.904 12 C -0.204 4.204 13 N -0.534 5.534 14 Si 0.816 3.184 15 H -0.198 1.198 16 H -0.184 1.184 17 H -0.211 1.211 18 C 0.021 3.979 19 C 0.339 3.661 20 O -0.440 6.440 21 O -0.330 6.330 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.257 -3.618 7.940 11.349 hybrid contribution 0.665 0.068 -1.625 1.757 sum -6.592 -3.550 6.315 9.795 Atomic orbital electron populations 1.21374 0.89268 1.03815 1.01959 1.21729 0.96130 0.91024 1.01541 1.21175 0.99058 0.94155 1.00488 1.23309 1.02567 1.01024 0.89391 1.22225 0.96953 1.05771 0.96676 0.87072 1.20107 0.85645 0.84181 0.83216 1.90478 1.70234 1.21967 1.66990 1.43585 1.20351 1.07666 1.44897 1.19651 0.97648 1.09589 1.19770 0.90448 1.25968 1.03943 0.96410 0.94122 1.69882 1.35653 1.24034 1.23872 0.84897 0.77327 0.78780 0.77361 1.19810 1.18381 1.21062 1.20803 0.95789 0.86716 0.94610 1.23884 0.78197 0.79527 0.84479 1.90607 1.63478 1.39886 1.50029 1.84455 1.55466 1.37241 1.55838 0.90049 0.93225 0.90176 0.93932 0.95068 0.90933 0.84428 0.89398 0.91600 0.86380 0.86442 0.72740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 9.85 71.98 0.71 -1.82 16 2 C -0.10 -3.31 2.70 -52.18 -0.14 -3.45 16 3 C -0.09 -3.29 8.09 71.98 0.58 -2.71 16 4 C -0.13 -3.61 9.52 30.59 0.29 -3.31 16 5 C -0.20 -7.40 4.53 -11.54 -0.05 -7.46 16 6 H 0.11 4.01 6.73 -2.38 -0.02 4.00 16 7 C 0.48 24.24 7.18 87.66 0.63 24.87 16 8 O -0.61 -35.03 12.75 -3.07 -0.04 -35.07 16 9 N -0.45 -23.35 2.18 -639.61 -1.39 -24.75 16 10 C -0.34 -19.51 9.35 84.04 0.79 -18.73 16 11 H 0.08 4.79 7.36 -2.91 -0.02 4.77 16 12 C 0.00 -0.18 4.89 84.93 0.42 0.23 16 13 N -0.89 -47.34 9.25 21.66 0.20 -47.14 16 14 Si 0.99 42.76 29.60 68.60 2.03 44.79 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 C 0.15 6.41 4.85 85.63 0.42 6.82 16 19 C 0.50 21.96 5.73 71.23 0.41 22.37 16 20 O -0.55 -29.43 16.81 21.95 0.37 -29.06 16 21 O -0.52 -17.64 13.42 -51.48 -0.69 -18.33 16 22 H 0.08 1.59 7.92 -2.38 -0.02 1.57 16 23 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.08 1.50 7.90 -2.39 -0.02 1.48 16 25 H 0.04 1.68 7.02 -2.38 -0.02 1.66 16 26 H 0.03 1.32 7.26 -2.39 -0.02 1.30 16 27 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 28 H 0.14 2.78 8.05 -2.39 -0.02 2.76 16 29 H 0.09 2.70 8.05 -2.39 -0.02 2.68 16 30 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.12 5.37 6.34 -2.39 -0.02 5.35 16 32 H 0.12 4.08 6.98 -2.39 -0.02 4.06 16 33 H 0.41 10.50 9.10 -74.06 -0.67 9.83 16 Total: -1.00 -74.49 279.12 4.98 -69.51 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.46 Total: 23.24 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 4.04 Total: 16.81 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.19 Total: -71.88 kcal Atomic # 8 Polarization: -82.11 SS G_CDS: -0.36 Total: -82.47 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -74.49 4.98 -69.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833556615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.999 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds