Wall clock time and date at job start Thu Apr 9 2020 12:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36937 * 119.99870 * 2 1 4 4 H 1.08004 * 120.00286 * 203.04767 * 3 2 1 5 5 C 1.38807 * 120.00019 * 23.04652 * 3 2 1 6 6 N 1.31617 * 120.00426 * 12.92862 * 5 3 2 7 7 Si 1.86800 * 120.00170 * 192.92670 * 5 3 2 8 8 H 1.48499 * 109.47395 * 59.99996 * 7 5 3 9 9 H 1.48497 * 109.47420 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47083 * 299.99936 * 7 5 3 11 11 C 1.46506 * 120.00388 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46916 * 89.99798 * 11 2 1 13 13 C 1.53001 * 109.46888 * 180.02562 * 12 11 2 14 14 N 1.46504 * 109.47110 * 180.02562 * 13 12 11 15 15 C 1.34766 * 124.17824 * 269.72657 * 14 13 12 16 16 O 1.21240 * 127.15248 * 0.02562 * 15 14 13 17 17 C 1.51579 * 105.68375 * 179.97438 * 15 14 13 18 18 N 1.47304 * 103.59576 * 0.32383 * 17 15 14 19 19 C 1.33791 * 124.17696 * 90.02216 * 14 13 12 20 20 O 1.21542 * 123.77101 * 359.96662 * 19 14 13 21 21 H 1.08998 * 109.46956 * 275.12011 * 1 2 3 22 22 H 1.09001 * 109.47170 * 35.12374 * 1 2 3 23 23 H 1.09004 * 109.47061 * 155.11916 * 1 2 3 24 24 H 0.96991 * 120.00706 * 180.02562 * 6 5 3 25 25 H 1.08996 * 109.46845 * 209.99747 * 11 2 1 26 26 H 1.08992 * 109.46817 * 330.00081 * 11 2 1 27 27 H 1.09000 * 109.47309 * 300.00421 * 12 11 2 28 28 H 1.09005 * 109.47062 * 60.00701 * 12 11 2 29 29 H 1.08998 * 109.47169 * 299.99668 * 13 12 11 30 30 H 1.08992 * 109.47010 * 60.00182 * 13 12 11 31 31 H 1.09004 * 110.76512 * 241.71004 * 17 15 14 32 32 H 1.09002 * 110.56173 * 118.83178 * 17 15 14 33 33 H 0.97001 * 126.69638 * 179.77025 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3662 5 6 1.5386 2.3400 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3158 4.0073 0.1456 8 1 2.4195 4.2281 -1.3192 9 1 1.4735 5.0719 0.7477 10 1 3.6719 4.0475 0.7495 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 3.2171 -3.0350 -1.4439 14 7 3.4618 -3.4570 -2.8253 15 6 2.6250 -4.2366 -3.5383 16 8 1.5676 -4.7028 -3.1716 17 6 3.2802 -4.4080 -4.8944 18 7 4.5308 -3.6390 -4.7744 19 6 4.5463 -3.1208 -3.5330 20 8 5.4458 -2.4263 -3.1019 21 1 -0.3633 0.0917 1.0236 22 1 -0.3633 0.8405 -0.5913 23 1 -0.3633 -0.9323 -0.4324 24 1 -0.0154 3.0662 1.4744 25 1 3.1499 -1.1385 0.5133 26 1 1.6085 -2.0286 0.5129 27 1 1.5001 -1.8398 -1.9572 28 1 3.0417 -0.9498 -1.9568 29 1 4.1695 -2.9053 -0.9299 30 1 2.6277 -3.7947 -0.9305 31 1 2.6504 -3.9955 -5.6827 32 1 3.4935 -5.4595 -5.0863 33 1 5.2106 -3.5276 -5.4573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:36 Heat of formation + Delta-G solvation = -19.201645 kcal Electronic energy + Delta-G solvation = -17347.329836 eV Core-core repulsion = 14410.016927 eV Total energy + Delta-G solvation = -2937.312909 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.32470 -38.59410 -36.29454 -36.12469 -34.83651 -32.07942 -30.09248 -27.89020 -26.07044 -25.56888 -22.96819 -22.57415 -20.38070 -20.17847 -18.09919 -17.13267 -16.82308 -16.51008 -15.60367 -15.33231 -14.73123 -14.30401 -14.23038 -14.13624 -13.82376 -13.36530 -12.89455 -12.68341 -11.92208 -11.42656 -11.21327 -10.87760 -10.77236 -10.65793 -10.46395 -10.28970 -10.16351 -9.88112 -9.74603 -9.72526 -9.56357 -8.47996 -6.67874 -5.65931 -3.12836 1.54665 2.17329 2.97134 3.02334 3.43912 3.48319 3.50413 3.87011 4.55595 4.64932 4.74497 5.06772 5.27549 5.46010 5.50594 5.52424 5.66604 5.97579 6.06638 6.32974 6.45923 6.58682 6.78149 6.81480 7.00387 7.03617 7.30348 7.43603 7.78801 7.87364 8.05347 8.46684 9.30529 9.93912 10.42896 11.38901 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.032206 B = 0.005548 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.202262 B = 5045.598498 C = 5565.551476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.157 3.843 12 C -0.154 4.154 13 C 0.119 3.881 14 N -0.572 5.572 15 C 0.518 3.482 16 O -0.470 6.470 17 C 0.062 3.938 18 N -0.734 5.734 19 C 0.699 3.301 20 O -0.537 6.537 21 H 0.031 0.969 22 H 0.039 0.961 23 H -0.002 1.002 24 H 0.252 0.748 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 -14.845 -12.140 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.028 3.972 12 C -0.195 4.195 13 C -0.002 4.002 14 N -0.318 5.318 15 C 0.305 3.695 16 O -0.340 6.340 17 C -0.066 4.066 18 N -0.400 5.400 19 C 0.400 3.600 20 O -0.410 6.410 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.016 0.984 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 5.395 -14.543 -11.477 19.296 hybrid contribution 0.593 1.029 -0.624 1.342 sum 5.988 -13.514 -12.101 19.103 Atomic orbital electron populations 1.20790 0.82647 0.95339 0.99446 1.43868 1.01854 1.00652 1.86049 1.19168 0.98275 0.85663 1.35325 0.91456 1.25015 0.97916 0.98506 0.98240 1.70060 1.19471 1.27230 1.38656 0.86336 0.78487 0.83830 0.77901 1.21174 1.21639 1.20871 1.20592 0.96349 0.88610 0.91610 1.22675 0.99467 0.94305 1.03041 1.21884 1.02528 0.98497 0.77249 1.46546 1.20854 1.47674 1.16727 1.20866 0.84042 0.77333 0.87264 1.90830 1.19556 1.48190 1.75393 1.22445 0.86807 0.99875 0.97427 1.45433 1.24134 1.55335 1.15050 1.15934 0.82337 0.80159 0.81613 1.91042 1.37307 1.39865 1.72762 0.95028 0.94230 0.98387 0.93764 0.93152 0.94366 0.92383 0.91444 0.88745 0.89045 0.86089 0.86201 0.71699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 8.98 59.84 0.54 4.71 16 2 N -0.60 -15.77 2.92 -181.12 -0.53 -16.30 16 3 C -0.25 -7.28 9.65 -15.06 -0.15 -7.42 16 4 H 0.07 1.90 7.86 -52.48 -0.41 1.48 16 5 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 6 N -0.91 -27.30 10.71 55.49 0.59 -26.70 16 7 Si 0.90 22.58 29.57 -169.99 -5.03 17.55 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.16 3.30 5.64 -4.04 -0.02 3.27 16 12 C -0.15 -2.82 5.86 -26.73 -0.16 -2.98 16 13 C 0.12 1.75 5.70 -4.04 -0.02 1.72 16 14 N -0.57 -7.66 2.60 -120.73 -0.31 -7.97 16 15 C 0.52 6.06 8.32 -10.56 -0.09 5.97 16 16 O -0.47 -6.90 17.76 5.59 0.10 -6.80 16 17 C 0.06 0.41 7.97 -4.32 -0.03 0.37 16 18 N -0.73 -6.00 6.58 -65.74 -0.43 -6.44 16 19 C 0.70 9.32 8.62 -88.02 -0.76 8.57 16 20 O -0.54 -9.35 17.48 5.33 0.09 -9.25 16 21 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 22 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 23 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 24 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 26 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.09 1.36 7.86 -51.93 -0.41 0.95 16 30 H 0.09 1.22 8.00 -51.93 -0.42 0.81 16 31 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.44 2.40 8.96 -40.82 -0.37 2.04 16 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -35.32 287.19 -6.41 -41.74 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.44 Total: -4.32 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: -0.78 Total: 14.17 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.68 Total: -57.41 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.19 Total: -16.06 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.32 -6.41 -41.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.535 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds