Wall clock time and date at job start Thu Apr 9 2020 12:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36937 * 119.99870 * 2 1 4 4 H 1.08004 * 120.00286 * 203.04767 * 3 2 1 5 5 C 1.38807 * 120.00019 * 23.04652 * 3 2 1 6 6 N 1.31617 * 120.00426 * 12.92862 * 5 3 2 7 7 Si 1.86800 * 120.00170 * 192.92670 * 5 3 2 8 8 H 1.48499 * 109.47395 * 59.99996 * 7 5 3 9 9 H 1.48497 * 109.47420 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47083 * 299.99936 * 7 5 3 11 11 C 1.46506 * 120.00388 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46916 * 89.99798 * 11 2 1 13 13 C 1.53001 * 109.46888 * 180.02562 * 12 11 2 14 14 N 1.46504 * 109.47110 * 180.02562 * 13 12 11 15 15 C 1.34766 * 124.17824 * 269.72657 * 14 13 12 16 16 O 1.21240 * 127.15248 * 0.02562 * 15 14 13 17 17 C 1.51579 * 105.68375 * 179.97438 * 15 14 13 18 18 N 1.47304 * 103.59576 * 0.32383 * 17 15 14 19 19 C 1.33791 * 124.17696 * 90.02216 * 14 13 12 20 20 O 1.21542 * 123.77101 * 359.96662 * 19 14 13 21 21 H 1.08998 * 109.46956 * 275.12011 * 1 2 3 22 22 H 1.09001 * 109.47170 * 35.12374 * 1 2 3 23 23 H 1.09004 * 109.47061 * 155.11916 * 1 2 3 24 24 H 0.96991 * 120.00706 * 180.02562 * 6 5 3 25 25 H 1.08996 * 109.46845 * 209.99747 * 11 2 1 26 26 H 1.08992 * 109.46817 * 330.00081 * 11 2 1 27 27 H 1.09000 * 109.47309 * 300.00421 * 12 11 2 28 28 H 1.09005 * 109.47062 * 60.00701 * 12 11 2 29 29 H 1.08998 * 109.47169 * 299.99668 * 13 12 11 30 30 H 1.08992 * 109.47010 * 60.00182 * 13 12 11 31 31 H 1.09004 * 110.76512 * 241.71004 * 17 15 14 32 32 H 1.09002 * 110.56173 * 118.83178 * 17 15 14 33 33 H 0.97001 * 126.69638 * 179.77025 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3662 5 6 1.5386 2.3400 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3158 4.0073 0.1456 8 1 2.4195 4.2281 -1.3192 9 1 1.4735 5.0719 0.7477 10 1 3.6719 4.0475 0.7495 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 3.2171 -3.0350 -1.4439 14 7 3.4618 -3.4570 -2.8253 15 6 2.6250 -4.2366 -3.5383 16 8 1.5676 -4.7028 -3.1716 17 6 3.2802 -4.4080 -4.8944 18 7 4.5308 -3.6390 -4.7744 19 6 4.5463 -3.1208 -3.5330 20 8 5.4458 -2.4263 -3.1019 21 1 -0.3633 0.0917 1.0236 22 1 -0.3633 0.8405 -0.5913 23 1 -0.3633 -0.9323 -0.4324 24 1 -0.0154 3.0662 1.4744 25 1 3.1499 -1.1385 0.5133 26 1 1.6085 -2.0286 0.5129 27 1 1.5001 -1.8398 -1.9572 28 1 3.0417 -0.9498 -1.9568 29 1 4.1695 -2.9053 -0.9299 30 1 2.6277 -3.7947 -0.9305 31 1 2.6504 -3.9955 -5.6827 32 1 3.4935 -5.4595 -5.0863 33 1 5.2106 -3.5276 -5.4573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:35 Heat of formation + Delta-G solvation = -45.938480 kcal Electronic energy + Delta-G solvation = -17348.489232 eV Core-core repulsion = 14410.016927 eV Total energy + Delta-G solvation = -2938.472306 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.26687 -39.62005 -38.01246 -37.16269 -36.17869 -33.83989 -31.84149 -28.70483 -27.99320 -27.28585 -24.34164 -23.79315 -22.11653 -21.30186 -19.03059 -18.75642 -18.02588 -17.68757 -17.00044 -16.43638 -16.24942 -15.90424 -15.36837 -15.26525 -15.02847 -14.82108 -14.58532 -14.24836 -13.50477 -13.11221 -12.81852 -12.71649 -12.63618 -12.38450 -12.15306 -12.01270 -11.91324 -11.53567 -11.28611 -10.92143 -10.63298 -10.38690 -8.79799 -7.84539 -5.34411 0.64501 1.23670 1.44234 1.46697 1.53678 1.96785 2.33023 2.49589 3.08569 3.28026 3.62851 3.79465 4.19252 4.22801 4.29598 4.34899 4.45216 4.50046 4.72607 4.78238 4.81660 4.90211 5.18458 5.22820 5.43454 5.60558 5.67560 5.86091 6.10094 6.31270 6.42094 7.12979 7.13754 7.85301 8.28817 9.18410 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.032206 B = 0.005548 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.202262 B = 5045.598498 C = 5565.551476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.621 5.621 3 C -0.267 4.267 4 H 0.065 0.935 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.281 1.281 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.153 3.847 12 C -0.132 4.132 13 C 0.126 3.874 14 N -0.581 5.581 15 C 0.511 3.489 16 O -0.504 6.504 17 C 0.077 3.923 18 N -0.709 5.709 19 C 0.692 3.308 20 O -0.588 6.588 21 H 0.008 0.992 22 H 0.013 0.987 23 H 0.029 0.971 24 H 0.249 0.751 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -16.213 -14.024 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.345 5.345 3 C -0.397 4.397 4 H 0.083 0.917 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.207 1.207 9 H -0.216 1.216 10 H -0.200 1.200 11 C 0.027 3.973 12 C -0.173 4.173 13 C 0.004 3.996 14 N -0.327 5.327 15 C 0.301 3.699 16 O -0.376 6.376 17 C -0.049 4.049 18 N -0.375 5.375 19 C 0.392 3.608 20 O -0.464 6.464 21 H 0.026 0.974 22 H 0.031 0.969 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 6.121 -15.971 -13.432 21.747 hybrid contribution 0.366 1.352 -0.078 1.402 sum 6.487 -14.620 -13.510 20.936 Atomic orbital electron populations 1.20536 0.82775 0.95753 0.97749 1.44135 1.02185 1.01787 1.86363 1.19443 0.98385 0.87016 1.34827 0.91704 1.25791 0.98640 1.01890 0.98394 1.70216 1.20752 1.27771 1.39734 0.85326 0.77817 0.79482 0.77742 1.20734 1.21563 1.20028 1.20771 0.96028 0.87120 0.93428 1.22300 0.99004 0.95584 1.00413 1.21626 1.02202 0.96836 0.78898 1.46576 1.21580 1.48105 1.16402 1.21725 0.83369 0.76045 0.88797 1.90818 1.20960 1.49363 1.76453 1.22721 0.85517 1.02221 0.94479 1.45371 1.24948 1.53872 1.13291 1.16135 0.81689 0.80043 0.82901 1.91008 1.39005 1.42319 1.74102 0.97354 0.96857 0.95234 0.94153 0.93333 0.92389 0.93246 0.94178 0.88703 0.87482 0.82807 0.81831 0.69867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 8.98 127.77 1.15 10.34 16 2 N -0.62 -32.88 2.92 -726.95 -2.12 -35.01 16 3 C -0.27 -15.42 9.65 84.03 0.81 -14.61 16 4 H 0.07 3.70 7.86 -2.91 -0.02 3.68 16 5 C -0.05 -3.04 5.10 84.86 0.43 -2.61 16 6 N -0.94 -57.36 10.71 21.65 0.23 -57.13 16 7 Si 0.97 46.84 29.57 68.60 2.03 48.87 16 8 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 9 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 C 0.15 6.42 5.64 86.38 0.49 6.90 16 12 C -0.13 -4.83 5.86 30.59 0.18 -4.65 16 13 C 0.13 3.61 5.70 86.38 0.49 4.10 16 14 N -0.58 -14.71 2.60 -773.12 -2.01 -16.73 16 15 C 0.51 10.68 8.32 87.94 0.73 11.41 16 16 O -0.50 -13.85 17.76 -2.91 -0.05 -13.90 16 17 C 0.08 0.65 7.97 85.76 0.68 1.33 16 18 N -0.71 -9.26 6.58 -480.32 -3.16 -12.42 16 19 C 0.69 17.43 8.62 179.44 1.55 18.98 16 20 O -0.59 -20.36 17.48 -3.85 -0.07 -20.42 16 21 H 0.01 0.46 7.34 -2.39 -0.02 0.44 16 22 H 0.01 0.72 7.34 -2.39 -0.02 0.70 16 23 H 0.03 1.31 8.03 -2.38 -0.02 1.29 16 24 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 25 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 26 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.09 2.70 7.86 -2.39 -0.02 2.69 16 30 H 0.11 2.72 8.00 -2.39 -0.02 2.70 16 31 H 0.15 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.45 3.37 8.96 -92.71 -0.83 2.54 16 Total: -1.00 -78.66 287.19 1.64 -77.01 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: 0.29 Total: -1.47 kcal Atomic # 6 Polarization: 24.68 SS G_CDS: 6.51 Total: 31.19 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -7.07 Total: -121.28 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.12 Total: -34.33 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -78.66 1.64 -77.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.074 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds