Wall clock time and date at job start Thu Apr 9 2020 12:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.56763 * 2 1 4 4 C 1.50401 * 109.72929 * 239.78001 * 2 1 3 5 5 O 1.21285 * 118.45964 * 47.58028 * 4 2 1 6 6 N 1.33376 * 123.05201 * 227.82699 * 4 2 1 7 7 C 1.45649 * 124.58631 * 3.77011 * 6 4 2 8 8 C 1.52986 * 110.77393 * 338.37287 * 7 6 4 9 9 N 1.47048 * 109.56962 * 120.23082 * 2 1 3 10 10 C 1.34782 * 121.35261 * 342.58792 * 9 2 1 11 11 O 1.21586 * 120.00128 * 354.44598 * 10 9 2 12 12 N 1.34773 * 119.99996 * 174.45064 * 10 9 2 13 13 C 1.46503 * 120.00089 * 185.00255 * 12 10 9 14 14 C 1.50701 * 109.47198 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00014 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99755 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99938 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46908 * 60.00388 * 18 16 14 20 20 H 1.48502 * 109.47132 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47468 * 300.00681 * 18 16 14 22 22 H 1.08999 * 109.47688 * 310.07273 * 1 2 3 23 23 H 1.08998 * 109.46665 * 70.08056 * 1 2 3 24 24 H 1.09001 * 109.46836 * 190.07330 * 1 2 3 25 25 H 0.97000 * 117.71120 * 184.04481 * 6 4 2 26 26 H 1.08996 * 109.22385 * 98.71233 * 7 6 4 27 27 H 1.08999 * 109.21526 * 218.08732 * 7 6 4 28 28 H 1.08999 * 109.72214 * 166.39750 * 8 7 6 29 29 H 1.08994 * 109.72522 * 287.00990 * 8 7 6 30 30 H 0.97002 * 120.00232 * 4.99369 * 12 10 9 31 31 H 1.09003 * 109.46252 * 299.99452 * 13 12 10 32 32 H 1.08989 * 109.47534 * 59.99220 * 13 12 10 33 33 H 0.97001 * 119.99996 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0377 -0.7126 -1.2233 5 8 1.5558 -0.4284 -2.2994 6 7 2.9897 -1.6456 -1.1791 7 6 3.5988 -2.1480 0.0449 8 6 3.4252 -1.1462 1.1881 9 7 2.0225 -0.6976 1.1971 10 6 1.2226 -0.9179 2.2593 11 8 0.1005 -0.4503 2.2826 12 7 1.6665 -1.6565 3.2955 13 6 0.7622 -1.9880 4.3994 14 6 1.4987 -2.8156 5.4210 15 1 2.5366 -3.0696 5.2635 16 6 0.8476 -3.2485 6.5566 17 7 -0.4163 -2.9396 6.7481 18 14 1.7604 -4.2750 7.8225 19 1 2.9172 -3.5036 8.3443 20 1 0.8437 -4.6109 8.9415 21 1 2.2459 -5.5268 7.1881 22 1 -0.3634 0.6615 0.7864 23 1 -0.3632 0.3501 -0.9662 24 1 -0.3633 -1.0118 0.1798 25 1 3.3011 -2.0126 -2.0212 26 1 3.1267 -3.0912 0.3197 27 1 4.6621 -2.3155 -0.1261 28 1 3.6639 -1.6262 2.1372 29 1 4.0842 -0.2922 1.0321 30 1 2.5848 -1.9686 3.3105 31 1 0.4050 -1.0693 4.8647 32 1 -0.0862 -2.5549 4.0163 33 1 -0.8744 -3.2445 7.5468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334537397.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:10 Heat of formation + Delta-G solvation = -46.270351 kcal Electronic energy + Delta-G solvation = -17710.488415 eV Core-core repulsion = 14772.001718 eV Total energy + Delta-G solvation = -2938.486697 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81906 -38.97620 -36.43321 -34.75469 -33.98507 -32.60947 -30.98452 -28.63303 -26.96341 -25.08118 -23.25317 -22.54140 -20.34606 -19.04553 -18.18979 -17.20653 -16.73455 -15.86620 -15.75788 -15.50570 -14.91303 -14.68872 -14.10896 -13.84188 -13.11554 -13.08224 -12.90591 -12.26519 -12.04877 -11.87602 -11.75989 -11.67621 -11.36361 -10.99796 -10.90586 -10.30143 -10.25047 -9.43023 -9.29629 -8.93901 -8.76729 -8.54482 -7.83945 -6.19050 -4.26334 2.49053 2.78380 3.16373 3.22686 3.28273 3.29454 3.75879 4.23511 4.32349 4.50803 4.71546 4.91392 4.96703 5.17107 5.20914 5.25778 5.42231 5.61095 5.98595 6.25633 6.30680 6.61517 6.77925 6.95091 7.11454 7.43630 7.45971 7.52005 7.76207 7.96552 8.05184 8.67635 8.81173 9.22386 9.41751 10.91026 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.041339 B = 0.005597 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.163816 B = 5001.597872 C = 5497.700824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.155 3.845 3 H 0.098 0.902 4 C 0.516 3.484 5 O -0.548 6.548 6 N -0.718 5.718 7 C 0.094 3.906 8 C 0.096 3.904 9 N -0.643 5.643 10 C 0.701 3.299 11 O -0.583 6.583 12 N -0.727 5.727 13 C 0.266 3.734 14 C -0.544 4.544 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.397 0.603 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.384 0.616 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.591 1.899 -11.447 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.048 3.952 3 H 0.115 0.885 4 C 0.301 3.699 5 O -0.425 6.425 6 N -0.370 5.370 7 C -0.031 4.031 8 C -0.028 4.028 9 N -0.385 5.385 10 C 0.403 3.597 11 O -0.461 6.461 12 N -0.381 5.381 13 C 0.146 3.854 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.117 0.883 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.232 0.768 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.219 0.781 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.199 2.429 -11.557 14.970 hybrid contribution 1.275 -1.041 0.511 1.724 sum 10.474 1.388 -11.046 15.285 Atomic orbital electron populations 1.22067 0.89756 1.04852 1.02401 1.21061 0.98302 0.95413 0.80390 0.88457 1.20578 0.78575 0.79359 0.91341 1.90751 1.56772 1.64950 1.30068 1.45354 1.40006 1.41422 1.10182 1.21807 0.98702 0.97906 0.84730 1.21919 0.83649 0.97941 0.99313 1.47534 1.11187 1.63291 1.16507 1.15979 0.84008 0.79975 0.79736 1.90882 1.19369 1.55534 1.80327 1.45943 1.15769 1.54554 1.21838 1.19010 0.88666 0.95937 0.81826 1.21154 0.97759 1.34377 1.04957 0.92070 1.24933 0.94907 0.96099 0.97974 1.69963 1.09635 1.44784 1.27768 0.86476 0.79423 0.80378 0.80608 1.20076 1.21056 1.20108 0.88306 0.92305 0.91920 0.76764 0.90872 0.89365 0.87933 0.90393 0.78141 0.95518 0.95736 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.63 37.16 0.28 -1.90 16 2 C 0.16 2.25 3.66 -68.93 -0.25 2.00 16 3 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.52 7.20 7.35 -11.75 -0.09 7.11 16 5 O -0.55 -9.28 17.02 5.55 0.09 -9.18 16 6 N -0.72 -7.50 5.42 -61.34 -0.33 -7.83 16 7 C 0.09 0.78 7.34 -4.51 -0.03 0.75 16 8 C 0.10 0.96 6.51 -3.63 -0.02 0.94 16 9 N -0.64 -9.50 2.98 -172.26 -0.51 -10.01 16 10 C 0.70 13.78 8.01 -86.92 -0.70 13.08 16 11 O -0.58 -13.54 12.54 5.29 0.07 -13.47 16 12 N -0.73 -14.69 5.47 -66.41 -0.36 -15.05 16 13 C 0.27 6.86 5.43 -5.19 -0.03 6.83 16 14 C -0.54 -14.26 9.28 -34.44 -0.32 -14.58 16 15 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.57 13.29 55.43 0.74 -24.84 16 18 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H 0.10 1.77 6.35 -51.93 -0.33 1.44 16 23 H 0.06 0.90 7.57 -51.93 -0.39 0.50 16 24 H 0.06 1.16 7.41 -51.93 -0.38 0.77 16 25 H 0.40 3.49 8.80 -40.82 -0.36 3.13 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.96 5.67 -51.93 -0.29 0.66 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.38 6.49 5.86 -40.82 -0.24 6.25 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.70 8.14 -51.94 -0.42 0.28 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 274.65 15.07 4.14 4.14 Total: -1.00 -33.19 274.65 -6.52 -39.71 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.07 Total: 5.41 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: -1.25 Total: 15.87 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.47 Total: -57.73 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.16 Total: -22.66 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.19 -6.52 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537397.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.559 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds