Wall clock time and date at job start Thu Apr 9 2020 12:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48498 * 109.46975 * 270.00203 * 3 2 1 5 5 H 1.48496 * 109.47117 * 29.99822 * 3 2 1 6 6 H 1.48495 * 109.47109 * 150.00282 * 3 2 1 7 7 C 1.37873 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00050 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99959 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47277 * 179.97438 * 9 7 2 11 11 C 1.46483 * 110.99948 * 293.95354 * 10 9 7 12 12 C 1.46684 * 115.72399 * 141.67028 * 11 10 9 13 13 S 1.83658 * 108.59564 * 64.53479 * 12 11 10 14 14 C 1.80449 * 102.72954 * 294.47499 * 13 12 11 15 15 C 1.53783 * 113.29554 * 312.97280 * 14 13 12 16 16 C 1.53785 * 87.06978 * 220.45371 * 15 14 13 17 17 C 1.53768 * 113.22793 * 215.83432 * 14 13 12 18 18 C 1.53796 * 115.55575 * 84.36784 * 14 13 12 19 19 C 1.45969 * 111.00336 * 173.48515 * 10 9 7 20 20 H 0.97001 * 120.00126 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47372 * 59.99598 * 9 7 2 22 22 H 1.09008 * 109.47399 * 299.99740 * 9 7 2 23 23 H 1.08999 * 108.22860 * 20.04726 * 11 10 9 24 24 H 1.09003 * 108.22902 * 263.29362 * 11 10 9 25 25 H 1.08998 * 109.61628 * 304.79860 * 12 11 10 26 26 H 1.08999 * 109.76395 * 184.35459 * 12 11 10 27 27 H 1.09002 * 113.61887 * 335.00327 * 15 14 13 28 28 H 1.08997 * 113.61647 * 105.91070 * 15 14 13 29 29 H 1.08997 * 113.61565 * 270.92248 * 16 15 14 30 30 H 1.09001 * 113.68981 * 140.02467 * 16 15 14 31 31 H 1.09001 * 113.61413 * 254.15471 * 17 14 13 32 32 H 1.09001 * 113.61762 * 24.98181 * 17 14 13 33 33 H 1.08994 * 108.46353 * 77.92916 * 18 14 13 34 34 H 1.08997 * 108.46322 * 195.29588 * 18 14 13 35 35 H 1.09002 * 109.69768 * 346.68763 * 19 10 9 36 36 H 1.09000 * 109.70367 * 107.24629 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5789 -0.0001 11 6 3.6523 -3.2592 1.2494 12 6 3.2596 -4.6665 1.1199 13 16 4.7034 -5.6236 0.5095 14 6 4.9536 -4.9528 -1.1469 15 6 3.6544 -4.8472 -1.9629 16 6 4.4680 -5.3353 -3.1732 17 6 5.4146 -6.0085 -2.1654 18 6 5.7922 -3.6658 -1.2217 19 6 5.4521 -2.6208 -0.1541 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6807 0.8904 22 1 3.8752 -0.6795 -0.8895 23 1 2.8291 -2.7169 1.7145 24 1 4.5111 -3.2049 1.9185 25 1 2.4367 -4.7531 0.4103 26 1 2.9481 -5.0531 2.0903 27 1 2.8813 -5.5469 -1.6455 28 1 3.2861 -3.8267 -2.0673 29 1 4.9347 -4.5293 -3.7394 30 1 3.9305 -6.0413 -3.8062 31 1 6.4679 -5.9259 -2.4335 32 1 5.1231 -7.0254 -1.9026 33 1 6.8441 -3.9327 -1.1207 34 1 5.6469 -3.2158 -2.2038 35 1 5.8166 -1.6426 -0.4681 36 1 5.9144 -2.8983 0.7931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334636738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:17 Heat of formation + Delta-G solvation = 31.656630 kcal Electronic energy + Delta-G solvation = -16273.587624 eV Core-core repulsion = 13884.773309 eV Total energy + Delta-G solvation = -2388.814315 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19109 -37.13579 -32.71579 -31.62750 -30.16076 -26.92842 -25.47716 -24.60687 -22.48026 -21.91394 -19.94275 -18.56805 -16.94443 -16.25127 -15.37020 -14.74879 -14.61207 -14.46619 -14.09183 -13.81109 -13.11166 -12.84612 -12.52905 -12.23348 -11.98846 -11.82454 -11.52768 -11.22775 -11.05715 -10.67909 -10.66239 -10.33319 -10.16080 -10.12363 -9.97612 -9.77895 -9.31579 -9.02101 -8.63810 -7.51937 -7.26824 -6.11396 -4.09107 2.24435 2.98780 3.23728 3.31754 3.33061 4.36288 4.59724 4.74457 4.84892 4.99675 5.10276 5.20780 5.46377 5.57282 5.67076 5.72154 5.80357 5.88527 5.95523 5.99895 6.03631 6.14665 6.19722 6.33704 6.42572 6.47992 6.55599 6.60888 6.74294 6.77006 6.92918 7.52729 7.87494 7.95732 8.58843 8.96509 9.50377 11.01483 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.031848 B = 0.007569 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.964996 B = 3698.345246 C = 3818.788203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.161 3.839 10 N -0.512 5.512 11 C 0.046 3.954 12 C -0.047 4.047 13 S -0.297 6.297 14 C -0.020 4.020 15 C -0.116 4.116 16 C -0.139 4.139 17 C -0.114 4.114 18 C -0.079 4.079 19 C 0.044 3.956 20 H 0.264 0.736 21 H -0.011 1.011 22 H 0.025 0.975 23 H 0.089 0.911 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -8.765 -2.087 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.098 0.902 9 C 0.035 3.965 10 N -0.235 5.235 11 C -0.083 4.083 12 C -0.195 4.195 13 S -0.067 6.067 14 C -0.130 4.130 15 C -0.155 4.155 16 C -0.178 4.178 17 C -0.153 4.153 18 C -0.119 4.119 19 C -0.086 4.086 20 H 0.074 0.926 21 H 0.007 0.993 22 H 0.043 0.957 23 H 0.107 0.893 24 H 0.053 0.947 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.463 -9.694 -1.919 14.392 hybrid contribution 0.099 2.341 0.089 2.345 sum 10.562 -7.353 -1.830 12.999 Atomic orbital electron populations 1.69888 1.06120 1.26887 1.50809 1.24892 0.94712 0.98832 0.94785 0.86884 0.80297 0.84113 0.78592 1.20173 1.21206 1.19304 1.21001 0.88659 0.94675 1.50547 0.90156 1.20319 0.97106 0.83997 0.95072 1.62109 1.08957 1.18338 1.34100 1.21017 1.01519 0.94066 0.91744 1.22576 0.96702 0.96744 1.03515 1.86331 1.44572 1.54871 1.20950 1.23775 1.00561 0.97304 0.91406 1.23120 0.94725 1.03913 0.93761 1.22846 0.98437 1.00126 0.96417 1.22960 0.99375 0.97980 0.95007 1.21609 0.97255 0.93111 0.99921 1.22379 0.90284 0.97719 0.98199 0.92627 0.99350 0.95678 0.89328 0.94698 0.89108 0.88361 0.90421 0.88420 0.90229 0.91568 0.91544 0.89563 0.92716 0.91640 0.92214 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.51 -13.85 8.65 -34.44 -0.30 -14.15 16 8 H 0.08 2.37 7.85 -52.48 -0.41 1.96 16 9 C 0.16 3.73 3.42 -4.98 -0.02 3.72 16 10 N -0.51 -10.06 2.86 -240.89 -0.69 -10.75 16 11 C 0.05 0.86 4.46 -7.07 -0.03 0.82 16 12 C -0.05 -0.78 6.10 34.14 0.21 -0.57 16 13 S -0.30 -4.70 21.04 -107.50 -2.26 -6.96 16 14 C -0.02 -0.30 0.87 -89.40 -0.08 -0.38 16 15 C -0.12 -1.80 5.66 -25.92 -0.15 -1.95 16 16 C -0.14 -1.76 7.69 -25.92 -0.20 -1.96 16 17 C -0.11 -1.44 7.20 -25.93 -0.19 -1.63 16 18 C -0.08 -1.17 4.91 -26.21 -0.13 -1.30 16 19 C 0.04 0.74 5.46 -4.22 -0.02 0.71 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 22 H 0.03 0.59 7.39 -51.92 -0.38 0.20 16 23 H 0.09 1.85 6.63 -51.93 -0.34 1.51 16 24 H 0.03 0.62 6.78 -51.93 -0.35 0.27 16 25 H 0.09 1.60 7.18 -51.93 -0.37 1.23 16 26 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.08 1.22 7.72 -51.93 -0.40 0.82 16 28 H 0.10 1.80 7.34 -51.93 -0.38 1.42 16 29 H 0.08 0.97 7.50 -51.93 -0.39 0.58 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.97 7.05 -51.93 -0.37 0.60 16 35 H 0.06 0.99 7.48 -51.93 -0.39 0.60 16 36 H 0.05 0.83 6.77 -51.93 -0.35 0.48 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -28.34 281.72 -9.39 -37.72 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.79 Total: 0.29 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.00 Total: -14.83 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.08 Total: -36.82 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.26 Total: -6.96 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.34 -9.39 -37.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334636738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.380 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds