Wall clock time and date at job start Thu Apr 9 2020 12:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48496 * 109.46944 * 269.99685 * 3 2 1 5 5 H 1.48495 * 109.47239 * 29.99705 * 3 2 1 6 6 H 1.48500 * 109.47116 * 150.00157 * 3 2 1 7 7 C 1.37883 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00235 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47544 * 179.97438 * 9 7 2 11 11 C 1.46470 * 110.99651 * 64.01788 * 10 9 7 12 12 C 1.53247 * 109.85946 * 197.76826 * 11 10 9 13 13 S 1.81905 * 108.50469 * 297.99993 * 12 11 10 14 14 C 1.81899 * 101.91477 * 51.30496 * 13 12 11 15 15 C 1.46461 * 111.00204 * 190.00365 * 10 9 7 16 16 H 1.09008 * 109.40418 * 282.26969 * 15 10 9 17 17 C 1.53001 * 109.40865 * 42.11225 * 15 10 9 18 18 C 1.53778 * 113.61263 * 179.97438 * 17 15 10 19 19 C 1.53787 * 87.08035 * 139.98349 * 18 17 15 20 20 C 1.53778 * 113.61526 * 277.49902 * 17 15 10 21 21 H 0.97005 * 119.99782 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46842 * 60.00167 * 9 7 2 23 23 H 1.09003 * 109.47165 * 300.00430 * 9 7 2 24 24 H 1.09004 * 109.40859 * 317.88731 * 11 10 9 25 25 H 1.09004 * 109.40578 * 77.73073 * 11 10 9 26 26 H 1.08999 * 109.62894 * 57.70132 * 12 11 10 27 27 H 1.08992 * 109.63182 * 178.29362 * 12 11 10 28 28 H 1.08992 * 109.63329 * 188.98844 * 14 13 12 29 29 H 1.09005 * 109.63127 * 68.39568 * 14 13 12 30 30 H 1.08999 * 112.84834 * 48.80710 * 17 15 10 31 31 H 1.08998 * 113.61879 * 25.43831 * 18 17 15 32 32 H 1.08999 * 113.61887 * 254.52938 * 18 17 15 33 33 H 1.09004 * 113.61202 * 89.11582 * 19 18 17 34 34 H 1.08994 * 113.61447 * 220.02014 * 19 18 17 35 35 H 1.08993 * 113.61229 * 105.47191 * 20 17 15 36 36 H 1.09000 * 113.61263 * 334.56841 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2054 -3.6158 0.0015 11 6 3.0027 -3.6250 1.2301 12 6 4.2550 -4.4857 1.0316 13 16 3.7329 -6.1931 0.6836 14 6 2.5387 -5.9526 -0.6673 15 6 1.5227 -4.8899 -0.2350 16 1 1.0309 -5.2129 0.6826 17 6 0.4762 -4.7092 -1.3363 18 6 -0.3015 -5.9947 -1.6639 19 6 -1.5557 -5.1125 -1.7811 20 6 -0.8543 -4.1258 -0.8321 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5575 -0.8881 23 1 0.6245 -2.5563 0.8919 24 1 3.2993 -2.6056 1.4770 25 1 2.4073 -4.0365 2.0452 26 1 4.8341 -4.1015 0.1919 27 1 4.8606 -4.4655 1.9376 28 1 2.0229 -6.8908 -0.8715 29 1 3.0615 -5.6164 -1.5628 30 1 0.8712 -4.2020 -2.2165 31 1 -0.3420 -6.7034 -0.8368 32 1 -0.0038 -6.4574 -2.6049 33 1 -1.7174 -4.7144 -2.7828 34 1 -2.4504 -5.5668 -1.3555 35 1 -1.0026 -3.0802 -1.1017 36 1 -1.0459 -4.3233 0.2226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335197989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:28 Heat of formation + Delta-G solvation = 21.801620 kcal Electronic energy + Delta-G solvation = -16201.737644 eV Core-core repulsion = 13812.495984 eV Total energy + Delta-G solvation = -2389.241660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.37109 -36.34463 -32.85333 -31.21322 -30.00947 -26.13706 -25.58913 -24.92437 -22.37580 -21.97297 -19.53868 -19.05360 -16.54934 -16.20806 -15.59012 -14.79873 -14.50175 -14.08874 -13.99448 -13.56951 -13.16966 -12.89265 -12.22684 -12.12361 -12.06072 -11.58294 -11.47282 -11.21618 -11.04913 -10.76431 -10.72451 -10.56525 -10.05856 -9.93712 -9.87864 -9.80171 -9.13090 -9.09153 -8.44260 -7.45504 -7.23768 -6.06693 -4.07306 2.18249 2.87327 3.28682 3.35288 3.38041 4.36857 4.62524 4.93969 5.07433 5.14929 5.21685 5.29843 5.43206 5.55970 5.56914 5.70906 5.79770 5.83490 5.93549 6.01990 6.10224 6.13910 6.18768 6.31836 6.46395 6.54379 6.65949 6.70226 6.92222 7.32791 7.33934 7.75201 8.06219 8.14087 8.51464 8.99421 9.56406 11.03623 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.020033 B = 0.009322 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.360101 B = 3003.043939 C = 4218.782775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.189 3.811 10 N -0.545 5.545 11 C 0.062 3.938 12 C -0.066 4.066 13 S -0.307 6.307 14 C -0.058 4.058 15 C 0.098 3.902 16 H 0.041 0.959 17 C -0.094 4.094 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.131 4.131 21 H 0.261 0.739 22 H 0.054 0.946 23 H -0.010 1.010 24 H 0.099 0.901 25 H 0.031 0.969 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -10.173 -1.259 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.065 3.935 10 N -0.270 5.270 11 C -0.068 4.068 12 C -0.214 4.214 13 S -0.080 6.080 14 C -0.207 4.207 15 C -0.013 4.013 16 H 0.059 0.941 17 C -0.114 4.114 18 C -0.176 4.176 19 C -0.182 4.182 20 C -0.168 4.168 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.007 0.993 24 H 0.117 0.883 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.853 -10.949 -1.123 11.161 hybrid contribution -0.412 1.926 0.128 1.973 sum 1.440 -9.023 -0.995 9.192 Atomic orbital electron populations 1.69942 1.05935 1.26721 1.50880 1.24946 0.94854 0.99129 0.95459 0.86549 0.79738 0.83319 0.78112 1.20686 1.21334 1.19940 1.21209 0.93417 0.90192 1.50228 0.92094 1.20020 0.90138 0.86327 0.97044 1.61362 1.27627 1.02882 1.35154 1.22108 0.92661 1.00683 0.91319 1.23569 1.00972 0.92288 1.04598 1.86504 1.56477 1.15757 1.49282 1.23512 0.97402 1.01843 0.97946 1.21691 0.92259 0.90426 0.96908 0.94097 1.22561 0.93578 0.96523 0.98723 1.22949 0.97002 0.96555 1.01045 1.22845 0.96747 0.98321 1.00307 1.23137 0.94724 1.00159 0.98779 0.92951 0.92855 0.99264 0.88312 0.95127 0.89385 0.88560 0.88506 0.89498 0.88513 0.90594 0.91934 0.90511 0.92129 0.89549 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.79 8.24 -34.44 -0.28 -14.08 16 8 H 0.06 1.64 7.13 -52.49 -0.37 1.26 16 9 C 0.19 4.62 3.46 -4.98 -0.02 4.60 16 10 N -0.54 -11.26 4.32 -228.47 -0.99 -12.25 16 11 C 0.06 1.19 5.25 -3.93 -0.02 1.17 16 12 C -0.07 -1.07 6.69 37.29 0.25 -0.82 16 13 S -0.31 -4.96 22.40 -107.50 -2.41 -7.37 16 14 C -0.06 -0.91 5.79 37.29 0.22 -0.69 16 15 C 0.10 1.72 1.81 -67.82 -0.12 1.60 16 16 H 0.04 0.77 7.71 -51.92 -0.40 0.37 16 17 C -0.09 -1.55 2.30 -89.81 -0.21 -1.75 16 18 C -0.14 -1.83 6.63 -25.92 -0.17 -2.00 16 19 C -0.14 -2.01 8.08 -25.89 -0.21 -2.22 16 20 C -0.13 -2.25 5.76 -25.90 -0.15 -2.40 16 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.05 1.35 4.25 -51.93 -0.22 1.13 16 23 H -0.01 -0.28 8.09 -51.93 -0.42 -0.70 16 24 H 0.10 2.05 6.40 -51.93 -0.33 1.72 16 25 H 0.03 0.60 7.91 -51.93 -0.41 0.19 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.10 1.32 7.37 -51.93 -0.38 0.94 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.10 1.73 7.99 -51.93 -0.42 1.31 16 31 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.75 6.81 -51.93 -0.35 1.40 16 36 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 LS Contribution 287.21 15.07 4.33 4.33 Total: -1.00 -27.64 287.21 -9.98 -37.62 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.81 Total: 1.44 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.81 Total: -15.11 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.25 Total: -37.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.41 Total: -7.37 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.64 -9.98 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335197989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.420 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds