Wall clock time and date at job start Thu Apr 9 2020 12:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45649 * 117.70836 * 2 1 4 4 C 1.53463 * 110.73960 * 157.95918 * 3 2 1 5 5 N 1.47264 * 107.93442 * 46.91591 * 4 3 2 6 6 C 1.34775 * 121.35567 * 118.51698 * 5 4 3 7 7 O 1.21589 * 119.99889 * 359.70726 * 6 5 4 8 8 N 1.34776 * 120.00432 * 179.72035 * 6 5 4 9 9 C 1.46496 * 120.00006 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47106 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.47052 * 117.29388 * 298.23637 * 5 4 3 19 19 C 1.33384 * 117.70412 * 179.97438 * 2 1 3 20 20 O 1.21276 * 118.49046 * 4.35896 * 19 2 1 21 21 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46834 * 300.01774 * 1 2 3 23 23 H 1.08997 * 109.47098 * 60.01674 * 1 2 3 24 24 H 1.09000 * 109.22241 * 278.41448 * 3 2 1 25 25 H 1.09002 * 109.21645 * 37.79164 * 3 2 1 26 26 H 1.09000 * 109.85007 * 287.31577 * 4 3 2 27 27 H 1.08998 * 109.84404 * 166.50889 * 4 3 2 28 28 H 0.96998 * 119.99803 * 359.97438 * 8 6 5 29 29 H 1.09001 * 109.47001 * 59.99676 * 9 8 6 30 30 H 1.09000 * 109.47574 * 299.99892 * 9 8 6 31 31 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.56538 * 162.80805 * 18 5 4 33 33 H 1.08997 * 109.57223 * 283.05250 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1422 1.2895 0.0000 4 6 3.5726 1.1520 0.5386 5 7 4.1972 -0.0056 -0.1236 6 6 5.2936 0.1349 -0.8947 7 8 5.7840 1.2353 -1.0595 8 7 5.8463 -0.9441 -1.4834 9 6 7.0377 -0.7912 -2.3221 10 6 7.4524 -2.1381 -2.8562 11 1 6.8848 -3.0196 -2.5971 12 6 8.5561 -2.2448 -3.6754 13 7 9.2475 -1.1713 -3.9904 14 14 9.0696 -3.9142 -4.3380 15 1 8.3915 -4.1616 -5.6358 16 1 10.5411 -3.9368 -4.5361 17 1 8.6843 -4.9712 -3.3688 18 6 3.5798 -1.3220 0.0958 19 6 2.0851 -1.1809 0.0005 20 8 1.4131 -2.1873 -0.0800 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5141 0.8899 23 1 -0.3633 0.5136 -0.8901 24 1 2.1757 1.6772 -1.0181 25 1 1.5889 1.9853 0.6307 26 1 3.5484 0.9905 1.6163 27 1 4.1408 2.0548 0.3142 28 1 5.4553 -1.8220 -1.3518 29 1 7.8490 -0.3710 -1.7276 30 1 6.8134 -0.1235 -3.1539 31 1 10.0238 -1.2464 -4.5671 32 1 3.9299 -2.0206 -0.6641 33 1 3.8508 -1.6922 1.0846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335712054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:39 Heat of formation + Delta-G solvation = -73.406283 kcal Electronic energy + Delta-G solvation = -17442.739929 eV Core-core repulsion = 14503.076531 eV Total energy + Delta-G solvation = -2939.663399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91264 -40.51927 -37.61614 -36.20123 -35.95165 -34.32254 -31.29361 -29.91930 -28.82962 -26.48497 -25.37327 -24.02355 -21.68830 -20.22520 -19.29410 -18.42327 -18.12965 -17.32472 -17.01317 -16.93441 -16.46990 -16.25278 -15.49033 -15.04536 -14.82770 -14.48235 -14.07242 -13.94860 -13.67569 -13.46185 -13.06439 -12.99210 -12.90315 -12.71361 -12.39670 -12.20265 -11.63414 -11.47308 -11.09031 -10.80543 -10.11545 -9.84368 -9.52253 -8.28409 -6.44513 1.37170 1.43045 1.46316 1.49819 1.58403 1.95870 2.15732 2.38379 3.02718 3.06845 3.30737 3.74797 3.97407 4.16657 4.28080 4.42201 4.50084 4.63106 4.67761 4.89319 4.96112 5.03581 5.16552 5.27378 5.39489 5.47222 5.62410 5.82502 5.94969 6.24970 6.66076 6.91249 7.07177 7.25256 7.59435 8.83723 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.005422 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.295805 B = 5163.058960 C = 5742.866968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.103 3.897 4 C 0.110 3.890 5 N -0.634 5.634 6 C 0.701 3.299 7 O -0.634 6.634 8 N -0.725 5.725 9 C 0.285 3.715 10 C -0.557 4.557 11 H 0.080 0.920 12 C 0.008 3.992 13 N -0.928 5.928 14 Si 0.983 3.017 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.257 1.257 18 C 0.102 3.898 19 C 0.510 3.490 20 O -0.583 6.583 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.401 0.599 29 H -0.009 1.009 30 H -0.012 1.012 31 H 0.269 0.731 32 H 0.109 0.891 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.422 2.347 10.817 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.334 5.334 3 C -0.020 4.020 4 C -0.013 4.013 5 N -0.374 5.374 6 C 0.402 3.598 7 O -0.515 6.515 8 N -0.379 5.379 9 C 0.162 3.838 10 C -0.595 4.595 11 H 0.098 0.902 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.806 3.194 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.181 1.181 18 C -0.023 4.023 19 C 0.297 3.703 20 O -0.463 6.463 21 H 0.090 0.910 22 H 0.110 0.890 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.237 0.763 29 H 0.009 0.991 30 H 0.006 0.994 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.218 2.710 10.535 19.529 hybrid contribution 0.487 -0.814 -0.615 1.131 sum -15.731 1.896 9.920 18.694 Atomic orbital electron populations 1.21957 0.78063 1.04126 1.03449 1.47247 1.08754 1.06023 1.71332 1.22046 0.92789 0.84083 1.03072 1.22163 0.91808 0.89519 0.97788 1.47368 1.28766 1.09259 1.52005 1.16063 0.80407 0.84467 0.78840 1.90845 1.65837 1.26432 1.68418 1.45525 1.31694 1.08777 1.51923 1.18452 0.81094 0.96600 0.87666 1.21580 1.13234 0.93457 1.31198 0.90179 1.25995 0.95761 1.01540 0.95924 1.70132 1.18962 1.31091 1.36507 0.85184 0.77241 0.78140 0.78820 1.19752 1.20765 1.18088 1.21859 0.88245 0.86014 1.06219 1.20367 0.90812 0.83400 0.75691 1.90718 1.66167 1.36939 1.52516 0.90952 0.89028 0.90929 0.91900 0.85052 0.87689 0.87893 0.76250 0.99064 0.99410 0.92190 0.87266 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.43 127.77 1.33 2.33 16 2 N -0.60 -11.89 3.20 -850.42 -2.72 -14.61 16 3 C 0.10 1.62 6.60 86.69 0.57 2.19 16 4 C 0.11 2.22 6.56 86.39 0.57 2.79 16 5 N -0.63 -18.10 2.97 -840.39 -2.50 -20.60 16 6 C 0.70 28.55 8.34 179.05 1.49 30.05 16 7 O -0.63 -31.09 15.82 -4.00 -0.06 -31.15 16 8 N -0.72 -31.46 5.45 -482.30 -2.63 -34.09 16 9 C 0.28 15.72 5.43 85.64 0.46 16.19 16 10 C -0.56 -30.49 9.28 25.60 0.24 -30.25 16 11 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 14 Si 0.98 42.55 29.54 68.60 2.03 44.57 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 18 C 0.10 2.48 6.43 85.45 0.55 3.03 16 19 C 0.51 12.99 7.58 87.79 0.67 13.66 16 20 O -0.58 -18.54 15.97 -3.02 -0.05 -18.59 16 21 H 0.07 1.43 6.59 -2.39 -0.02 1.41 16 22 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.13 0.98 8.07 -2.39 -0.02 0.96 16 26 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.10 2.41 7.06 -2.39 -0.02 2.40 16 28 H 0.40 14.88 5.96 -92.71 -0.55 14.33 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.11 2.81 5.95 -2.39 -0.01 2.79 16 33 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -76.45 280.20 1.26 -75.18 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.57 Total: 13.93 kcal Atomic # 6 Polarization: 34.52 SS G_CDS: 6.34 Total: 40.86 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -7.57 Total: -124.81 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.11 Total: -49.74 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -76.45 1.26 -75.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335712054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.778 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds