Wall clock time and date at job start Thu Apr 9 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47313 * 269.99662 * 3 2 1 5 5 H 1.48500 * 109.47253 * 29.99777 * 3 2 1 6 6 H 1.48499 * 109.47116 * 149.99702 * 3 2 1 7 7 C 1.38954 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00031 * 0.02562 * 7 2 1 9 9 N 1.37104 * 119.99668 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99996 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99855 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99942 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.47014 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99795 * 180.02562 * 13 12 10 15 15 O 1.21578 * 120.00186 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99572 * 179.97438 * 14 13 12 17 17 C 1.47024 * 125.64847 * 359.68614 * 16 14 13 18 18 C 1.54327 * 107.26851 * 181.32598 * 17 16 14 19 19 C 1.55154 * 102.94372 * 22.19158 * 18 17 16 20 20 C 1.47426 * 125.64645 * 179.97438 * 16 14 13 21 21 H 0.97006 * 120.00012 * 0.02562 * 1 2 3 22 22 H 0.97003 * 119.99855 * 0.02562 * 9 7 2 23 23 H 1.08999 * 109.47855 * 59.99748 * 12 10 9 24 24 H 1.08995 * 109.46982 * 299.99024 * 12 10 9 25 25 H 0.97004 * 119.99661 * 359.97438 * 13 12 10 26 26 H 1.08997 * 109.88062 * 300.74548 * 17 16 14 27 27 H 1.09000 * 109.88248 * 61.90735 * 17 16 14 28 28 H 1.09005 * 110.71834 * 263.82776 * 18 17 16 29 29 H 1.08999 * 110.71553 * 140.55738 * 18 17 16 30 30 H 1.09000 * 111.00849 * 206.42090 * 19 18 17 31 31 H 1.09001 * 111.00585 * 82.56882 * 19 18 17 32 32 H 1.09004 * 110.36499 * 274.44757 * 20 16 14 33 33 H 1.08998 * 110.36482 * 36.65820 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4471 -3.4211 0.0011 12 6 5.5606 -2.3707 0.0022 13 7 6.0489 -3.7520 0.0026 14 6 7.3740 -3.9982 0.0042 15 8 8.1641 -3.0742 0.0048 16 7 7.8232 -5.2690 0.0050 17 6 6.9824 -6.4750 0.0110 18 6 7.9291 -7.6934 0.0438 19 6 9.2392 -7.0998 0.6256 20 6 9.2391 -5.6798 0.0062 21 1 -0.4850 0.8401 -0.0004 22 1 3.8648 -0.3634 0.0014 23 1 5.9234 -1.8572 0.8927 24 1 5.9246 -1.8566 -0.8873 25 1 5.4185 -4.4892 0.0025 26 1 6.3441 -6.4775 0.8945 27 1 6.3707 -6.5050 -0.8907 28 1 8.0942 -8.0806 -0.9616 29 1 7.5342 -8.4709 0.6977 30 1 10.1072 -7.6701 0.2947 31 1 9.1970 -7.0517 1.7137 32 1 9.6262 -5.7098 -1.0124 33 1 9.8314 -4.9979 0.6164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353254361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:49 Heat of formation + Delta-G solvation = -60.538708 kcal Electronic energy + Delta-G solvation = -16992.620923 eV Core-core repulsion = 14053.515504 eV Total energy + Delta-G solvation = -2939.105419 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17493 -38.55993 -37.36517 -34.49118 -33.72559 -31.84532 -31.57308 -29.20807 -27.58961 -24.53241 -23.17125 -21.36514 -19.79227 -19.62466 -18.78802 -17.88402 -16.68028 -15.91876 -15.44802 -15.11043 -15.03095 -14.31214 -14.14018 -13.72855 -13.37073 -13.13368 -12.95521 -12.59824 -12.44855 -12.13362 -11.97760 -11.55996 -11.43038 -11.22507 -10.99169 -10.63199 -10.08940 -10.04649 -9.68918 -8.97798 -8.75728 -8.47409 -8.29415 -6.40103 -3.92623 2.66036 3.00815 3.05558 3.13464 3.32457 3.58726 4.02528 4.05311 4.37209 4.46131 4.61962 4.68442 5.07229 5.15093 5.17351 5.44641 5.48597 5.62246 5.62776 5.69560 5.76219 5.81680 5.87705 5.91944 6.21891 6.66643 7.14615 7.45837 8.01127 8.13052 8.45306 8.73952 8.82466 9.30734 9.64589 10.72092 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.053641 B = 0.004557 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.867499 B = 6143.383097 C = 6613.821359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.126 3.874 13 N -0.723 5.723 14 C 0.723 3.277 15 O -0.597 6.597 16 N -0.640 5.640 17 C 0.096 3.904 18 C -0.129 4.129 19 C -0.134 4.134 20 C 0.125 3.875 21 H 0.275 0.725 22 H 0.375 0.625 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.408 0.592 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.269 -10.710 0.325 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.381 5.381 14 C 0.425 3.575 15 O -0.476 6.476 16 N -0.379 5.379 17 C -0.028 4.028 18 C -0.167 4.167 19 C -0.173 4.173 20 C 0.002 3.998 21 H 0.086 0.914 22 H 0.208 0.792 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.246 0.754 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.149 -10.492 0.320 19.261 hybrid contribution 0.128 1.052 -0.007 1.060 sum 16.277 -9.440 0.314 18.819 Atomic orbital electron populations 1.69620 1.05718 1.27805 1.48244 1.25062 0.95531 0.98170 0.97126 0.86667 0.79932 0.83733 0.79154 1.19382 1.19989 1.19190 1.19444 0.78963 0.96797 1.48658 0.86098 1.42114 1.07682 1.06127 1.65482 1.19653 0.88081 0.84869 0.84902 1.90532 1.69264 1.30943 1.55656 1.20813 0.93338 0.82892 1.03257 1.44770 1.05116 1.09296 1.78895 1.15341 0.82584 0.81612 0.78006 1.90896 1.55329 1.42285 1.59106 1.47514 1.07641 1.03752 1.79004 1.22036 0.94103 0.84510 1.02104 1.22603 0.95266 0.96746 1.02091 1.22809 0.98083 0.95351 1.01025 1.22039 0.81886 0.95129 1.00750 0.91396 0.79208 0.89872 0.89853 0.75420 0.91339 0.91318 0.90491 0.89940 0.89799 0.90555 0.91812 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.08 13.96 55.50 0.77 -24.30 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 N -0.58 -13.57 5.09 -10.96 -0.06 -13.63 16 10 C 0.44 9.85 7.85 -10.99 -0.09 9.77 16 11 O -0.58 -14.84 15.24 5.54 0.08 -14.76 16 12 C 0.13 2.29 6.15 -5.19 -0.03 2.25 16 13 N -0.72 -12.52 5.49 -66.41 -0.36 -12.89 16 14 C 0.72 12.38 8.49 -86.91 -0.74 11.64 16 15 O -0.60 -12.00 16.59 5.30 0.09 -11.91 16 16 N -0.64 -8.51 3.33 -176.22 -0.59 -9.09 16 17 C 0.10 0.99 6.15 -3.06 -0.02 0.97 16 18 C -0.13 -0.92 6.95 -24.90 -0.17 -1.09 16 19 C -0.13 -0.97 7.09 -24.57 -0.17 -1.14 16 20 C 0.13 1.31 6.91 -2.52 -0.02 1.30 16 21 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.41 6.96 6.42 -40.82 -0.26 6.70 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 LS Contribution 282.60 15.07 4.26 4.26 Total: -1.00 -33.31 282.60 -6.28 -39.58 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.27 Total: 12.26 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: -1.49 Total: 16.05 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.23 Total: -59.92 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.17 Total: -26.66 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.31 -6.28 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353254361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.955 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds