Wall clock time and date at job start Thu Apr 9 2020 12:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47313 * 269.99662 * 3 2 1 5 5 H 1.48500 * 109.47253 * 29.99777 * 3 2 1 6 6 H 1.48499 * 109.47116 * 149.99702 * 3 2 1 7 7 C 1.38954 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00031 * 0.02562 * 7 2 1 9 9 N 1.37104 * 119.99668 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99996 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99855 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99942 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.47014 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99795 * 180.02562 * 13 12 10 15 15 O 1.21578 * 120.00186 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99572 * 179.97438 * 14 13 12 17 17 C 1.47024 * 125.64847 * 359.68614 * 16 14 13 18 18 C 1.54327 * 107.26851 * 181.32598 * 17 16 14 19 19 C 1.55154 * 102.94372 * 22.19158 * 18 17 16 20 20 C 1.47426 * 125.64645 * 179.97438 * 16 14 13 21 21 H 0.97006 * 120.00012 * 0.02562 * 1 2 3 22 22 H 0.97003 * 119.99855 * 0.02562 * 9 7 2 23 23 H 1.08999 * 109.47855 * 59.99748 * 12 10 9 24 24 H 1.08995 * 109.46982 * 299.99024 * 12 10 9 25 25 H 0.97004 * 119.99661 * 359.97438 * 13 12 10 26 26 H 1.08997 * 109.88062 * 300.74548 * 17 16 14 27 27 H 1.09000 * 109.88248 * 61.90735 * 17 16 14 28 28 H 1.09005 * 110.71834 * 263.82776 * 18 17 16 29 29 H 1.08999 * 110.71553 * 140.55738 * 18 17 16 30 30 H 1.09000 * 111.00849 * 206.42090 * 19 18 17 31 31 H 1.09001 * 111.00585 * 82.56882 * 19 18 17 32 32 H 1.09004 * 110.36499 * 274.44757 * 20 16 14 33 33 H 1.08998 * 110.36482 * 36.65820 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4471 -3.4211 0.0011 12 6 5.5606 -2.3707 0.0022 13 7 6.0489 -3.7520 0.0026 14 6 7.3740 -3.9982 0.0042 15 8 8.1641 -3.0742 0.0048 16 7 7.8232 -5.2690 0.0050 17 6 6.9824 -6.4750 0.0110 18 6 7.9291 -7.6934 0.0438 19 6 9.2392 -7.0998 0.6256 20 6 9.2391 -5.6798 0.0062 21 1 -0.4850 0.8401 -0.0004 22 1 3.8648 -0.3634 0.0014 23 1 5.9234 -1.8572 0.8927 24 1 5.9246 -1.8566 -0.8873 25 1 5.4185 -4.4892 0.0025 26 1 6.3441 -6.4775 0.8945 27 1 6.3707 -6.5050 -0.8907 28 1 8.0942 -8.0806 -0.9616 29 1 7.5342 -8.4709 0.6977 30 1 10.1072 -7.6701 0.2947 31 1 9.1970 -7.0517 1.7137 32 1 9.6262 -5.7098 -1.0124 33 1 9.8314 -4.9979 0.6164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353254361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:48 Heat of formation + Delta-G solvation = -86.512364 kcal Electronic energy + Delta-G solvation = -16993.747225 eV Core-core repulsion = 14053.515504 eV Total energy + Delta-G solvation = -2940.231721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42286 -40.28942 -38.46079 -36.30619 -35.36063 -33.85339 -32.58370 -30.06041 -29.10080 -26.32331 -24.27893 -22.05826 -21.48273 -21.03313 -20.54762 -19.27241 -17.68652 -17.50365 -16.99819 -16.78429 -16.44753 -15.84763 -15.52392 -14.96350 -14.54434 -14.38154 -14.19651 -14.12633 -13.90668 -13.64010 -13.21020 -12.96350 -12.45498 -12.19769 -12.12336 -12.00506 -11.59264 -11.57765 -11.44593 -10.67845 -10.37820 -10.30426 -9.55471 -8.46461 -6.08623 1.30956 1.33863 1.43121 1.49382 1.76484 2.03190 2.20060 2.69674 3.04758 3.09775 3.69308 3.72747 3.97879 4.08487 4.31614 4.36328 4.40764 4.50296 4.65397 4.87950 4.93766 5.01027 5.12957 5.24256 5.27460 5.38156 5.48588 5.86524 5.98029 6.47615 6.76435 6.85784 7.26320 7.43470 7.76182 8.69938 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.053641 B = 0.004557 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.867499 B = 6143.383097 C = 6613.821359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.233 1.233 7 C -0.333 4.333 8 H 0.064 0.936 9 N -0.576 5.576 10 C 0.446 3.554 11 O -0.615 6.615 12 C 0.137 3.863 13 N -0.726 5.726 14 C 0.718 3.282 15 O -0.631 6.631 16 N -0.639 5.639 17 C 0.086 3.914 18 C -0.120 4.120 19 C -0.122 4.122 20 C 0.115 3.885 21 H 0.282 0.718 22 H 0.392 0.608 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.408 0.592 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.833 -10.553 0.363 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.157 1.157 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.216 5.216 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.009 3.991 13 N -0.384 5.384 14 C 0.419 3.581 15 O -0.513 6.513 16 N -0.377 5.377 17 C -0.036 4.036 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.008 4.008 21 H 0.091 0.909 22 H 0.228 0.772 23 H 0.119 0.881 24 H 0.120 0.880 25 H 0.246 0.754 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.743 -10.389 0.359 21.433 hybrid contribution -0.699 0.842 -0.028 1.094 sum 18.044 -9.548 0.332 20.417 Atomic orbital electron populations 1.69778 1.08020 1.29501 1.49157 1.26057 0.96424 1.02560 0.95616 0.85444 0.79560 0.77020 0.80108 1.18045 1.19723 1.15673 1.19041 0.80896 0.95330 1.50899 0.91817 1.41907 1.06161 1.07355 1.66176 1.20446 0.89906 0.83924 0.82411 1.90519 1.70743 1.32342 1.56468 1.20714 0.89422 0.83992 1.04968 1.44753 1.05467 1.08880 1.79310 1.15478 0.81972 0.82621 0.77987 1.90862 1.55871 1.43746 1.60779 1.47680 1.09415 1.03268 1.77355 1.22284 0.94713 0.84762 1.01874 1.22624 0.94201 0.95484 1.03420 1.22801 0.99192 0.93156 1.00879 1.22319 0.80135 0.96905 1.01394 0.90867 0.77180 0.88088 0.87983 0.75417 0.91663 0.91542 0.89176 0.88063 0.87038 0.90498 0.91065 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.45 13.96 21.66 0.30 -54.15 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.96 38.34 27.74 68.60 1.90 40.24 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 7 C -0.33 -19.04 10.16 84.04 0.85 -18.18 16 8 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 9 N -0.58 -26.90 5.09 -306.98 -1.56 -28.47 16 10 C 0.45 19.95 7.85 87.66 0.69 20.64 16 11 O -0.61 -32.28 15.24 -3.09 -0.05 -32.33 16 12 C 0.14 4.80 6.15 85.63 0.53 5.32 16 13 N -0.73 -24.62 5.49 -482.30 -2.65 -27.27 16 14 C 0.72 23.96 8.49 179.05 1.52 25.48 16 15 O -0.63 -24.77 16.59 -3.96 -0.07 -24.83 16 16 N -0.64 -16.25 3.33 -829.71 -2.76 -19.01 16 17 C 0.09 1.65 6.15 86.73 0.53 2.18 16 18 C -0.12 -1.34 6.95 31.78 0.22 -1.12 16 19 C -0.12 -1.39 7.09 31.99 0.23 -1.16 16 20 C 0.11 2.21 6.91 86.86 0.60 2.81 16 21 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 22 H 0.39 15.41 5.76 -92.71 -0.53 14.87 16 23 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 24 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 25 H 0.41 13.88 6.42 -92.71 -0.60 13.29 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.41 8.03 -2.39 -0.02 1.39 16 Total: -1.00 -75.29 282.60 0.71 -74.59 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.05 Total: 35.13 kcal Atomic # 6 Polarization: 30.45 SS G_CDS: 5.64 Total: 36.09 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -6.67 Total: -128.89 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.11 Total: -57.16 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -75.29 0.71 -74.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353254361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.925 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds