Wall clock time and date at job start Thu Apr 9 2020 12:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48507 * 109.46924 * 269.99601 * 3 2 1 5 5 H 1.48498 * 109.47367 * 29.99468 * 3 2 1 6 6 H 1.48495 * 109.47082 * 150.00030 * 3 2 1 7 7 C 1.37883 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99569 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47233 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99988 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99890 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99577 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.46820 * 180.02562 * 14 13 11 16 16 O 1.42899 * 109.47113 * 64.99987 * 15 14 13 17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16 20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16 21 21 H 0.96998 * 120.00192 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47253 * 59.99990 * 9 7 2 23 23 H 1.09001 * 109.47545 * 299.99901 * 9 7 2 24 24 H 1.09000 * 109.47027 * 60.00020 * 10 9 7 25 25 H 1.09001 * 109.47068 * 300.00362 * 10 9 7 26 26 H 0.96993 * 119.99950 * 0.02562 * 13 11 10 27 27 H 1.09000 * 109.47148 * 60.00417 * 14 13 11 28 28 H 1.09002 * 109.47641 * 299.99771 * 14 13 11 29 29 H 1.09007 * 109.46516 * 304.99920 * 15 14 13 30 30 H 1.09004 * 109.47113 * 185.00388 * 15 14 13 31 31 H 1.09002 * 109.47382 * 59.99956 * 17 16 15 32 32 H 1.09001 * 109.46938 * 299.99942 * 17 16 15 33 33 H 1.08995 * 115.55630 * 29.32572 * 18 17 16 34 34 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 35 35 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 36 36 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 37 37 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1657 -6.1344 0.0008 14 6 1.4332 -7.4030 0.0008 15 6 2.4275 -8.5660 0.0009 16 8 3.1697 -8.5580 1.2220 17 6 4.1321 -9.6095 1.3241 18 6 4.8627 -9.5037 2.6641 19 6 6.3665 -9.2235 2.6286 20 6 5.8561 -10.6127 3.0166 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 3.1356 -6.1343 0.0004 27 1 0.8062 -7.4607 -0.8890 28 1 0.8068 -7.4610 0.8910 29 1 3.1116 -8.4591 -0.8409 30 1 1.8854 -9.5075 -0.0887 31 1 4.8516 -9.5239 0.5097 32 1 3.6257 -10.5727 1.2617 33 1 4.2879 -9.0650 3.4797 34 1 6.8352 -9.1142 1.6506 35 1 6.7812 -8.6003 3.4209 36 1 5.9350 -10.9034 4.0642 37 1 5.9887 -11.4179 2.2940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360176115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:57 Heat of formation + Delta-G solvation = -77.767735 kcal Electronic energy + Delta-G solvation = -16534.477587 eV Core-core repulsion = 13698.165405 eV Total energy + Delta-G solvation = -2836.312182 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24251 -38.55357 -36.92299 -34.32013 -33.38210 -31.09005 -29.57512 -26.99855 -25.52627 -22.86283 -22.70052 -21.34513 -20.92023 -19.58201 -17.26213 -16.86880 -16.36229 -16.03306 -15.54736 -15.00543 -14.84400 -14.63375 -14.35676 -13.56333 -13.30353 -12.86811 -12.62803 -12.13154 -11.90928 -11.88011 -11.64419 -11.32167 -11.09801 -10.89133 -10.76366 -10.56919 -10.55354 -9.89242 -9.80358 -9.60561 -9.11715 -8.94180 -8.68913 -8.27485 -5.91784 -3.95902 3.15293 3.35528 3.36467 3.41995 3.44945 3.54792 3.67346 4.43794 4.51356 4.53724 4.65841 4.86595 4.94912 4.97560 5.09921 5.18947 5.27310 5.30560 5.42986 5.54829 5.58791 5.68062 5.75218 5.88517 5.97066 6.30713 6.33190 6.78787 6.94894 6.97112 7.79498 7.92629 7.99605 8.12649 8.44135 8.87484 9.13113 9.67277 11.19254 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030531 B = 0.003624 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.873626 B = 7724.808948 C = 8468.673933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.052 3.948 16 O -0.380 6.380 17 C 0.093 3.907 18 C -0.154 4.154 19 C -0.176 4.176 20 C -0.176 4.176 21 H 0.260 0.740 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.399 0.601 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 -22.072 1.992 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.414 6.414 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.025 4.025 16 O -0.299 6.299 17 C 0.016 3.984 18 C -0.172 4.172 19 C -0.213 4.213 20 C -0.213 4.213 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.233 0.767 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.416 -21.817 2.138 24.270 hybrid contribution 0.981 0.626 -0.194 1.180 sum 11.397 -21.191 1.944 24.140 Atomic orbital electron populations 1.70001 1.06053 1.26525 1.50332 1.25033 0.94827 0.99215 0.95375 0.86589 0.79784 0.83535 0.78022 1.20710 1.21246 1.19882 1.21242 0.92940 0.91057 1.51196 0.92609 1.18898 0.93201 0.89387 0.98600 1.21852 1.00684 0.91984 1.02446 1.21548 0.88617 0.85704 0.74381 1.90661 1.14503 1.87710 1.48517 1.46116 1.10170 1.05296 1.77805 1.21260 0.93822 0.82266 1.02865 1.22790 0.94232 0.98536 0.86937 1.87966 1.52464 1.51092 1.38415 1.21993 0.90631 0.90234 0.95499 1.22145 0.91957 1.04134 0.98938 1.23076 0.96137 0.98780 1.03329 1.22972 1.03467 0.92358 1.02485 0.92987 0.95858 0.95813 0.90249 0.90339 0.76674 0.90313 0.91001 0.92616 0.91916 0.93183 0.92995 0.86723 0.88640 0.88482 0.88418 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.92 13.29 55.43 0.74 -27.19 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.74 5.64 -27.88 -0.16 -2.90 16 11 C 0.51 10.28 7.83 -10.99 -0.09 10.20 16 12 O -0.54 -13.18 15.98 5.56 0.09 -13.10 16 13 N -0.74 -11.12 5.50 -60.29 -0.33 -11.45 16 14 C 0.12 1.57 6.06 -4.04 -0.02 1.54 16 15 C 0.05 0.49 6.07 37.16 0.23 0.71 16 16 O -0.38 -4.19 10.29 -35.23 -0.36 -4.55 16 17 C 0.09 0.78 6.22 37.16 0.23 1.01 16 18 C -0.15 -1.28 6.06 -90.62 -0.55 -1.83 16 19 C -0.18 -1.29 10.18 -26.73 -0.27 -1.56 16 20 C -0.18 -1.14 10.25 -26.73 -0.27 -1.41 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 24 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.40 5.03 8.47 -40.82 -0.35 4.68 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.37 7.88 -51.93 -0.41 -0.04 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -34.79 319.25 -7.72 -42.51 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.20 Total: -0.69 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.44 Total: -7.32 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.40 Total: -38.64 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.27 Total: -17.64 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.79 -7.72 -42.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360176115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.260 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds