Wall clock time and date at job start Thu Apr 9 2020 12:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48507 * 109.46924 * 269.99601 * 3 2 1 5 5 H 1.48498 * 109.47367 * 29.99468 * 3 2 1 6 6 H 1.48495 * 109.47082 * 150.00030 * 3 2 1 7 7 C 1.37883 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99569 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47233 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99988 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99890 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99577 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.46820 * 180.02562 * 14 13 11 16 16 O 1.42899 * 109.47113 * 64.99987 * 15 14 13 17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16 20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16 21 21 H 0.96998 * 120.00192 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47253 * 59.99990 * 9 7 2 23 23 H 1.09001 * 109.47545 * 299.99901 * 9 7 2 24 24 H 1.09000 * 109.47027 * 60.00020 * 10 9 7 25 25 H 1.09001 * 109.47068 * 300.00362 * 10 9 7 26 26 H 0.96993 * 119.99950 * 0.02562 * 13 11 10 27 27 H 1.09000 * 109.47148 * 60.00417 * 14 13 11 28 28 H 1.09002 * 109.47641 * 299.99771 * 14 13 11 29 29 H 1.09007 * 109.46516 * 304.99920 * 15 14 13 30 30 H 1.09004 * 109.47113 * 185.00388 * 15 14 13 31 31 H 1.09002 * 109.47382 * 59.99956 * 17 16 15 32 32 H 1.09001 * 109.46938 * 299.99942 * 17 16 15 33 33 H 1.08995 * 115.55630 * 29.32572 * 18 17 16 34 34 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 35 35 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 36 36 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 37 37 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1657 -6.1344 0.0008 14 6 1.4332 -7.4030 0.0008 15 6 2.4275 -8.5660 0.0009 16 8 3.1697 -8.5580 1.2220 17 6 4.1321 -9.6095 1.3241 18 6 4.8627 -9.5037 2.6641 19 6 6.3665 -9.2235 2.6286 20 6 5.8561 -10.6127 3.0166 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 3.1356 -6.1343 0.0004 27 1 0.8062 -7.4607 -0.8890 28 1 0.8068 -7.4610 0.8910 29 1 3.1116 -8.4591 -0.8409 30 1 1.8854 -9.5075 -0.0887 31 1 4.8516 -9.5239 0.5097 32 1 3.6257 -10.5727 1.2617 33 1 4.2879 -9.0650 3.4797 34 1 6.8352 -9.1142 1.6506 35 1 6.7812 -8.6003 3.4209 36 1 5.9350 -10.9034 4.0642 37 1 5.9887 -11.4179 2.2940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360176115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:56 Heat of formation + Delta-G solvation = -102.348732 kcal Electronic energy + Delta-G solvation = -16535.543499 eV Core-core repulsion = 13698.165405 eV Total energy + Delta-G solvation = -2837.378094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69096 -39.38740 -37.63181 -35.72026 -35.44265 -33.06138 -30.75770 -27.96811 -27.25295 -24.22704 -23.23852 -22.92027 -21.57078 -21.19784 -18.82334 -17.99612 -17.53135 -17.28191 -16.82298 -16.46169 -16.39409 -15.82716 -15.29620 -14.78669 -14.70018 -14.18016 -14.06385 -13.66923 -13.25809 -13.18932 -12.79650 -12.54711 -12.42849 -12.35839 -11.99754 -11.90922 -11.62872 -11.32421 -11.30155 -11.18831 -10.73438 -10.56422 -10.41944 -10.05183 -8.17332 -6.31565 1.42463 1.45643 1.56679 1.73423 2.28748 2.45650 2.52976 2.97277 3.15406 3.80088 3.98576 3.99129 4.10969 4.17522 4.21465 4.36665 4.44936 4.52567 4.55309 4.58529 4.68727 4.72555 4.79418 4.88479 5.03472 5.10283 5.25331 5.26398 5.46831 5.53567 5.64180 5.86275 6.18586 6.25839 6.63050 6.86934 7.36326 7.39000 8.95514 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030531 B = 0.003624 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.873626 B = 7724.808948 C = 8468.673933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.509 3.491 12 O -0.592 6.592 13 N -0.715 5.715 14 C 0.117 3.883 15 C 0.061 3.939 16 O -0.407 6.407 17 C 0.092 3.908 18 C -0.173 4.173 19 C -0.181 4.181 20 C -0.162 4.162 21 H 0.263 0.737 22 H -0.017 1.017 23 H -0.019 1.019 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.415 0.585 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.332 -22.964 1.564 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.297 3.703 12 O -0.472 6.472 13 N -0.368 5.368 14 C -0.007 4.007 15 C -0.016 4.016 16 O -0.327 6.327 17 C 0.016 3.984 18 C -0.191 4.191 19 C -0.217 4.217 20 C -0.199 4.199 21 H 0.072 0.928 22 H 0.002 0.998 23 H -0.001 1.001 24 H 0.119 0.881 25 H 0.124 0.876 26 H 0.252 0.748 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.308 -22.764 1.711 26.424 hybrid contribution 0.096 0.818 -0.035 0.824 sum 13.403 -21.947 1.676 25.770 Atomic orbital electron populations 1.70182 1.08345 1.27827 1.51496 1.26168 0.95753 1.04026 0.94618 0.85293 0.78631 0.77578 0.78563 1.19592 1.21164 1.17916 1.21727 0.94009 0.91633 1.50786 0.90606 1.18690 0.93716 0.92492 0.94678 1.21629 0.99319 0.90240 1.04728 1.21332 0.87801 0.86879 0.74243 1.90646 1.16662 1.88466 1.51441 1.45863 1.10969 1.04716 1.75268 1.21446 0.94768 0.82262 1.02206 1.22751 0.94013 0.97647 0.87174 1.87926 1.53275 1.52378 1.39149 1.22124 0.90480 0.90027 0.95775 1.22157 0.92388 1.05867 0.98714 1.23151 0.95334 0.99519 1.03744 1.23060 1.01437 0.92177 1.03240 0.92838 0.99823 1.00093 0.88138 0.87632 0.74789 0.89953 0.92867 0.90529 0.89464 0.91824 0.91747 0.88575 0.87905 0.88713 0.87886 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.59 13.29 21.45 0.28 -60.31 16 2 C -0.01 -0.50 5.46 84.66 0.46 -0.03 16 3 Si 0.98 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.40 4.26 29.85 0.13 2.53 16 10 C -0.12 -5.00 5.64 29.85 0.17 -4.83 16 11 C 0.51 20.68 7.83 87.66 0.69 21.36 16 12 O -0.59 -30.19 15.98 -3.03 -0.05 -30.23 16 13 N -0.71 -20.58 5.50 -463.04 -2.55 -23.13 16 14 C 0.12 2.87 6.06 86.38 0.52 3.40 16 15 C 0.06 0.98 6.07 71.99 0.44 1.42 16 16 O -0.41 -8.15 10.29 -148.98 -1.53 -9.68 16 17 C 0.09 1.32 6.22 71.98 0.45 1.77 16 18 C -0.17 -2.64 6.06 -10.79 -0.07 -2.70 16 19 C -0.18 -2.33 10.18 30.60 0.31 -2.02 16 20 C -0.16 -1.76 10.25 30.60 0.31 -1.45 16 21 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 22 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 23 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 24 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 25 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 26 H 0.42 9.41 8.47 -92.71 -0.79 8.63 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 0.73 7.88 -2.39 -0.02 0.71 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -78.47 319.25 2.08 -76.39 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.25 Total: 11.96 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 3.64 Total: -11.99 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.26 Total: -83.44 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.58 Total: -39.91 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -78.47 2.08 -76.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360176115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.959 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds