Wall clock time and date at job start Thu Apr 9 2020 12:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.46805 * 30.00090 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99756 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99828 * 0.02562 * 13 11 10 15 15 C 1.53004 * 109.46986 * 90.00387 * 14 13 11 16 16 O 1.42903 * 109.47454 * 64.99600 * 15 14 13 17 17 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 18 18 C 1.52999 * 109.47346 * 90.00236 * 17 13 11 19 19 C 1.53002 * 117.49899 * 243.61672 * 18 17 13 20 20 C 1.52996 * 60.00114 * 252.51022 * 19 18 17 21 21 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 26 26 H 1.09004 * 109.46971 * 209.99938 * 14 13 11 27 27 H 1.08993 * 109.47768 * 330.00002 * 14 13 11 28 28 H 1.09003 * 109.46797 * 185.00015 * 15 14 13 29 29 H 1.09002 * 109.47041 * 304.99175 * 15 14 13 30 30 H 0.96700 * 113.99874 * 179.97438 * 16 15 14 31 31 H 1.09008 * 109.47096 * 209.99661 * 17 13 11 32 32 H 1.09003 * 109.47776 * 329.99537 * 17 13 11 33 33 H 1.09001 * 115.54979 * 29.32886 * 18 17 13 34 34 H 1.09003 * 117.49376 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.49783 * 145.02044 * 19 18 17 36 36 H 1.09002 * 117.49978 * 252.50955 * 20 19 18 37 37 H 1.09001 * 117.50308 * 107.49262 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1652 -6.1345 0.0018 14 6 3.6302 -6.1345 0.0024 15 6 4.1395 -6.1342 1.4452 16 8 3.7611 -7.3551 2.0843 17 6 1.4326 -7.4031 0.0019 18 6 1.1782 -7.8452 -1.4406 19 6 -0.2766 -7.9337 -1.9063 20 6 0.5255 -9.2122 -1.6558 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8904 24 1 2.8716 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 3.9937 -7.0247 -0.5110 27 1 3.9938 -5.2448 -0.5114 28 1 5.2259 -6.0447 1.4469 29 1 3.7048 -5.2922 1.9838 30 1 4.0520 -7.4242 3.0039 31 1 2.0214 -8.1627 0.5161 32 1 0.4799 -7.2726 0.5153 33 1 1.9215 -7.5221 -2.1694 34 1 -1.0523 -7.6764 -1.1850 35 1 -0.4906 -7.6685 -2.9416 36 1 0.8392 -9.7882 -2.5264 37 1 0.2774 -9.7967 -0.7698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360395147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:59 Heat of formation + Delta-G solvation = -73.045473 kcal Electronic energy + Delta-G solvation = -17593.134328 eV Core-core repulsion = 14757.026918 eV Total energy + Delta-G solvation = -2836.107410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.61220 -37.15662 -36.97071 -34.55924 -33.46077 -31.05153 -29.44479 -27.14341 -25.08523 -22.99013 -22.24961 -21.59227 -20.33256 -18.45362 -17.67397 -16.73774 -16.35299 -15.68360 -15.40324 -14.69885 -14.39091 -14.22768 -13.99323 -13.66239 -12.93372 -12.56265 -12.32335 -12.15968 -12.08576 -11.48026 -11.41761 -11.32202 -11.09142 -10.91780 -10.59678 -10.38057 -10.13289 -9.89403 -9.82566 -9.59672 -9.13274 -8.91806 -8.36202 -8.28768 -5.95137 -3.99596 3.28451 3.32371 3.33372 3.39641 3.41941 3.94719 4.18799 4.47341 4.84407 4.96827 5.06171 5.08142 5.12386 5.24758 5.39701 5.42671 5.50071 5.62472 5.67545 5.78828 5.89957 5.95115 6.03117 6.20670 6.23450 6.24519 6.35347 6.85469 6.96006 7.51103 7.75458 7.85806 7.88420 8.08930 8.39954 8.83660 9.09261 9.63794 11.15861 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.005576 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.327847 B = 5020.322361 C = 5796.122666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.529 6.529 13 N -0.616 5.616 14 C 0.113 3.887 15 C 0.054 3.946 16 O -0.571 6.571 17 C 0.151 3.849 18 C -0.166 4.166 19 C -0.171 4.171 20 C -0.181 4.181 21 H 0.261 0.739 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.376 0.624 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 -16.528 0.535 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.403 6.403 13 N -0.350 5.350 14 C -0.011 4.011 15 C -0.025 4.025 16 O -0.376 6.376 17 C 0.028 3.972 18 C -0.186 4.186 19 C -0.208 4.208 20 C -0.219 4.219 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.222 0.778 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.473 -16.497 -0.047 18.110 hybrid contribution 0.859 1.076 0.473 1.456 sum 8.332 -15.420 0.426 17.532 Atomic orbital electron populations 1.69999 1.06062 1.26550 1.50184 1.25024 0.94805 0.99186 0.95329 0.86603 0.79760 0.83590 0.78062 1.20676 1.21229 1.19914 1.21216 0.92857 0.91035 1.51385 0.92679 1.18898 0.93193 0.89369 0.98597 1.21908 1.00707 0.92294 1.01976 1.21552 0.88512 0.85529 0.74515 1.90652 1.14359 1.87203 1.48118 1.48004 1.05771 1.06019 1.75238 1.21595 0.80871 1.03719 0.94928 1.22783 0.98066 0.86926 0.94693 1.86471 1.81775 1.39331 1.30003 1.20911 0.97736 0.85294 0.93305 1.22776 0.96790 0.99949 0.99074 1.22977 0.94726 1.00712 1.02346 1.22920 1.05264 0.90681 1.02990 0.92960 0.95841 0.95880 0.90592 0.90418 0.90130 0.88463 0.92849 0.92796 0.77756 0.89853 0.90381 0.88131 0.88473 0.89218 0.89148 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.13 -2.66 4.19 -27.88 -0.12 -2.78 16 11 C 0.51 10.26 7.67 -10.98 -0.08 10.17 16 12 O -0.53 -12.87 15.56 5.56 0.09 -12.78 16 13 N -0.62 -9.57 2.44 -173.69 -0.42 -10.00 16 14 C 0.11 1.33 5.62 -4.04 -0.02 1.31 16 15 C 0.05 0.57 7.38 37.16 0.27 0.85 16 16 O -0.57 -6.06 12.48 -35.23 -0.44 -6.50 16 17 C 0.15 2.18 5.51 -4.04 -0.02 2.16 16 18 C -0.17 -2.22 6.01 -90.62 -0.54 -2.76 16 19 C -0.17 -2.29 10.18 -26.73 -0.27 -2.57 16 20 C -0.18 -1.99 10.25 -26.73 -0.27 -2.27 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.08 1.42 7.26 -51.93 -0.38 1.05 16 25 H 0.08 1.46 7.40 -51.93 -0.38 1.07 16 26 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.10 1.07 6.44 -51.93 -0.33 0.74 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.65 7.30 -51.93 -0.38 0.27 16 30 H 0.38 2.43 9.12 45.56 0.42 2.85 16 31 H 0.08 1.09 7.12 -51.92 -0.37 0.72 16 32 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.10 1.41 8.03 -51.93 -0.42 1.00 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -34.74 311.13 -7.10 -41.84 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.13 Total: 1.65 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.59 Total: -8.68 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.31 Total: -36.84 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.35 Total: -19.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.74 -7.10 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360395147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.209 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds