Wall clock time and date at job start Thu Apr 9 2020 12:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.46805 * 30.00090 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99756 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99828 * 0.02562 * 13 11 10 15 15 C 1.53004 * 109.46986 * 90.00387 * 14 13 11 16 16 O 1.42903 * 109.47454 * 64.99600 * 15 14 13 17 17 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 18 18 C 1.52999 * 109.47346 * 90.00236 * 17 13 11 19 19 C 1.53002 * 117.49899 * 243.61672 * 18 17 13 20 20 C 1.52996 * 60.00114 * 252.51022 * 19 18 17 21 21 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 26 26 H 1.09004 * 109.46971 * 209.99938 * 14 13 11 27 27 H 1.08993 * 109.47768 * 330.00002 * 14 13 11 28 28 H 1.09003 * 109.46797 * 185.00015 * 15 14 13 29 29 H 1.09002 * 109.47041 * 304.99175 * 15 14 13 30 30 H 0.96700 * 113.99874 * 179.97438 * 16 15 14 31 31 H 1.09008 * 109.47096 * 209.99661 * 17 13 11 32 32 H 1.09003 * 109.47776 * 329.99537 * 17 13 11 33 33 H 1.09001 * 115.54979 * 29.32886 * 18 17 13 34 34 H 1.09003 * 117.49376 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.49783 * 145.02044 * 19 18 17 36 36 H 1.09002 * 117.49978 * 252.50955 * 20 19 18 37 37 H 1.09001 * 117.50308 * 107.49262 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1652 -6.1345 0.0018 14 6 3.6302 -6.1345 0.0024 15 6 4.1395 -6.1342 1.4452 16 8 3.7611 -7.3551 2.0843 17 6 1.4326 -7.4031 0.0019 18 6 1.1782 -7.8452 -1.4406 19 6 -0.2766 -7.9337 -1.9063 20 6 0.5255 -9.2122 -1.6558 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8904 24 1 2.8716 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 3.9937 -7.0247 -0.5110 27 1 3.9938 -5.2448 -0.5114 28 1 5.2259 -6.0447 1.4469 29 1 3.7048 -5.2922 1.9838 30 1 4.0520 -7.4242 3.0039 31 1 2.0214 -8.1627 0.5161 32 1 0.4799 -7.2726 0.5153 33 1 1.9215 -7.5221 -2.1694 34 1 -1.0523 -7.6764 -1.1850 35 1 -0.4906 -7.6685 -2.9416 36 1 0.8392 -9.7882 -2.5264 37 1 0.2774 -9.7967 -0.7698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360395147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:59 Heat of formation + Delta-G solvation = -98.061209 kcal Electronic energy + Delta-G solvation = -17594.219091 eV Core-core repulsion = 14757.026918 eV Total energy + Delta-G solvation = -2837.192173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04087 -38.37878 -37.85713 -35.77163 -35.57912 -33.02245 -30.49907 -28.72273 -26.84314 -24.14026 -23.39059 -23.14174 -21.59880 -19.85729 -18.91267 -18.29647 -17.59560 -17.27893 -16.73829 -16.47342 -15.80311 -15.43798 -15.25656 -14.66461 -14.42154 -14.14555 -14.03374 -13.46486 -13.34762 -13.09309 -12.84389 -12.58243 -12.46037 -12.41999 -12.24721 -11.91324 -11.59394 -11.40723 -11.30121 -10.90448 -10.87203 -10.57727 -10.55779 -9.61803 -8.17443 -6.31900 1.42512 1.45548 1.56343 1.72144 2.06233 2.43668 2.91069 3.15661 3.44377 3.75747 3.82928 3.99922 4.11871 4.20413 4.29086 4.39287 4.43158 4.51167 4.59207 4.68088 4.75648 4.79270 4.84787 4.89618 4.99985 5.12029 5.22156 5.26753 5.48739 5.62003 5.69977 5.85403 6.17427 6.45135 6.86726 6.94583 7.31518 7.38756 8.95510 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.005576 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.327847 B = 5020.322361 C = 5796.122666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.506 3.494 12 O -0.586 6.586 13 N -0.603 5.603 14 C 0.101 3.899 15 C 0.057 3.943 16 O -0.587 6.587 17 C 0.153 3.847 18 C -0.177 4.177 19 C -0.196 4.196 20 C -0.146 4.146 21 H 0.262 0.738 22 H -0.021 1.021 23 H -0.021 1.021 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.394 0.606 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.983 -17.355 0.369 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.006 3.994 10 C -0.155 4.155 11 C 0.296 3.704 12 O -0.466 6.466 13 N -0.335 5.335 14 C -0.021 4.021 15 C -0.021 4.021 16 O -0.395 6.395 17 C 0.031 3.969 18 C -0.196 4.196 19 C -0.233 4.233 20 C -0.184 4.184 21 H 0.071 0.929 22 H -0.002 1.002 23 H -0.003 1.003 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.243 0.757 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.961 -17.377 -0.198 20.546 hybrid contribution -0.207 1.240 0.549 1.372 sum 10.753 -16.137 0.351 19.395 Atomic orbital electron populations 1.70190 1.08439 1.27791 1.51521 1.26160 0.95683 1.04014 0.94602 0.85307 0.78714 0.77603 0.78533 1.19706 1.21308 1.17660 1.21703 0.94017 0.91431 1.50742 0.90390 1.18681 0.93686 0.92623 0.94444 1.21668 0.99260 0.90181 1.04349 1.21445 0.87758 0.86794 0.74428 1.90635 1.16692 1.88060 1.51217 1.47974 1.07625 1.04899 1.72963 1.22007 0.77936 1.05520 0.96644 1.22720 0.99814 0.86309 0.93290 1.86412 1.82294 1.39171 1.31624 1.20956 0.96683 0.84988 0.94289 1.22751 0.96500 1.02262 0.98135 1.22974 0.94627 1.03818 1.01885 1.23015 1.01784 0.89420 1.04134 0.92898 1.00225 1.00274 0.88104 0.87816 0.87734 0.87355 0.89450 0.94617 0.75662 0.87742 0.93308 0.87648 0.90648 0.89114 0.86791 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.30 13.29 21.45 0.28 -60.01 16 2 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.46 4.26 29.85 0.13 2.59 16 10 C -0.12 -4.73 4.19 29.85 0.13 -4.61 16 11 C 0.51 20.83 7.67 87.66 0.67 21.51 16 12 O -0.59 -30.41 15.56 -3.02 -0.05 -30.45 16 13 N -0.60 -18.19 2.44 -821.82 -2.00 -20.19 16 14 C 0.10 2.07 5.62 86.38 0.49 2.56 16 15 C 0.06 1.03 7.38 71.98 0.53 1.56 16 16 O -0.59 -10.76 12.48 -148.98 -1.86 -12.62 16 17 C 0.15 4.35 5.51 86.38 0.48 4.82 16 18 C -0.18 -4.52 6.01 -10.79 -0.06 -4.59 16 19 C -0.20 -5.34 10.18 30.59 0.31 -5.03 16 20 C -0.15 -2.90 10.25 30.59 0.31 -2.59 16 21 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 22 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 23 H -0.02 -1.37 8.10 -2.38 -0.02 -1.39 16 24 H 0.10 3.63 7.26 -2.39 -0.02 3.62 16 25 H 0.10 3.71 7.40 -2.39 -0.02 3.69 16 26 H 0.10 1.71 8.07 -2.38 -0.02 1.69 16 27 H 0.11 2.00 6.44 -2.39 -0.02 1.99 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 0.77 7.30 -2.39 -0.02 0.76 16 30 H 0.39 4.01 9.12 -74.06 -0.68 3.33 16 31 H 0.10 2.52 7.12 -2.38 -0.02 2.50 16 32 H 0.05 1.68 7.15 -2.39 -0.02 1.66 16 33 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -79.79 311.13 2.45 -77.34 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.38 Total: 14.09 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.67 Total: -14.41 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.72 Total: -80.20 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.91 Total: -43.07 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -79.79 2.45 -77.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360395147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.726 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds